PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10017050m

Common Name

EUTSA_v10017050mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 282aa MW: 31754.7 Da PI: 8.2686

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10017050m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.9	7.9e-17	211	259	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r++r++kNRe+A rsR+RK+a++ eLe kv +Le+eN++L+ +l+e +k Thhalv10017050m 211 RRQKRMIKNRESAARSRARKQAYTHELEIKVSSLEEENEKLR-RLKEVEK 259 79***************************************9.8877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-14	205	253	No hit	No description
SMART	SM00338	5.9E-11	207	263	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.174	209	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-10	211	253	No hit	No description
Pfam	PF00170	3.0E-14	211	254	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.13E-21	211	256	No hit	No description
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGSLRGNVEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNLDELL KSVWSAEANQ 60 PPEATEEGIS RQGSLTLPRD LSKKTVDEVW RDIQQDNNGS SHGERRDSNN KQPTLGEITL 120 EDLLLKAGVV TETLVPQNVV SIASNGQWVQ YHQPQHQHHH QGFMPYPVCE MQEMVSPTSL 180 MMGGLSDTQQ AHGRKRVASS GGEFVEKTVE RRQKRMIKNR ESAARSRARK QAYTHELEIK 240 VSSLEEENEK LRRLKEVEKI LPNEPPPDPK WKLRRTSSAC F*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10017050m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF334209	1e-105	AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBank	AJ420881	1e-105	AJ420881.1 Arabidopsis thaliana partial mRNA for basic leucine zipper transcription factor (atbzip12 gene).
GenBank	AK118113	1e-105	AK118113.1 Arabidopsis thaliana At2g41070 mRNA for putative bZIP transcription factor AtbZIP12 / DPBF4, complete cds, clone: RAFL19-38-L08.
GenBank	AY084668	1e-105	AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBank	BT025175	1e-105	BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411374.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9C5Q2	1e-149	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	V4MCB1	0.0	V4MCB1_EUTSA; Uncharacterized protein
STRING	XP_006411374.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	1e-132	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thhalv10017050m
Entrez Gene	18027645

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]