PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10017047m | ||||||||
Common Name | EUTSA_v10017047mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 283aa MW: 32376.6 Da PI: 8.7804 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.3 | 6.3e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+ Thhalv10017047m 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73 79***********************************************8 PP | |||||||
2 | K-box | 78.5 | 1.7e-26 | 95 | 160 | 7 | 72 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 s++ea+++++qqe++kL+++i+ +q+ +Rh+lGe+L+sL+lkeL++Le++Lek+++++RskK ++ Thhalv10017047m 95 PSVTEANTQYYQQESSKLRRQIRDIQNLNRHILGESLGSLNLKELKNLESRLEKGISRVRSKKVNH 160 45899**********************************************************775 PP | |||||||
3 | K-box | 22.3 | 5.3e-09 | 193 | 224 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100 ++e+l+++ie++qk+e elq++n++Lr+k+ e Thhalv10017047m 193 QHEMLVAEIEYMQKREIELQNDNMYLRSKITE 224 689**************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.1E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.389 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.05E-43 | 17 | 90 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-21 | 100 | 222 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.503 | 102 | 228 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQESS KLRRQIRDIQ 120 NLNRHILGES LGSLNLKELK NLESRLEKGI SRVRSKKVNH YSFIDQTSMF GYIVFTTLSD 180 YSCPLHLIFV FPQHEMLVAE IEYMQKREIE LQNDNMYLRS KITERVGLQQ QESSVIHQGT 240 VYESGVSSSH QSDQYNRSYI PVNLLEPNQN PSDQDQPPLQ LV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1tqe_P | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_B | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_C | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
5f28_D | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
6c9l_A | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10017047m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU424343 | 0.0 | EU424343.1 Brassica napus shatterproof 2 (SHP2) mRNA, SHP2-b allele, complete cds. | |||
GenBank | JQ973083 | 0.0 | JQ973083.1 Brassica napus Shatterproof (SHP2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411553.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_024016859.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_024016860.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Refseq | XP_024016861.1 | 0.0 | agamous-like MADS-box protein AGL5 isoform X1 | ||||
Swissprot | P29385 | 1e-166 | AGL5_ARATH; Agamous-like MADS-box protein AGL5 | ||||
TrEMBL | V4P152 | 0.0 | V4P152_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411553.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3341 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42830.1 | 1e-143 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10017047m |
Entrez Gene | 18026503 |