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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10017047m |
| Common Name | EUTSA_v10017047mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 283aa MW: 32376.6 Da PI: 8.7804 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10017047m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 97.3 | 6.3e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
Thhalv10017047m 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 73
79***********************************************8 PP
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| 2 | K-box | 78.5 | 1.7e-26 | 95 | 160 | 7 | 72 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72
s++ea+++++qqe++kL+++i+ +q+ +Rh+lGe+L+sL+lkeL++Le++Lek+++++RskK ++
Thhalv10017047m 95 PSVTEANTQYYQQESSKLRRQIRDIQNLNRHILGESLGSLNLKELKNLESRLEKGISRVRSKKVNH 160
45899**********************************************************775 PP
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| 3 | K-box | 22.3 | 5.3e-09 | 193 | 224 | 69 | 100 |
K-box 69 KnellleqieelqkkekelqeenkaLrkklee 100
++e+l+++ie++qk+e elq++n++Lr+k+ e
Thhalv10017047m 193 QHEMLVAEIEYMQKREIELQNDNMYLRSKITE 224
689**************************976 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 9.1E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 33.389 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.05E-43 | 17 | 90 | No hit | No description |
| SuperFamily | SSF55455 | 2.62E-32 | 17 | 88 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 4.1E-26 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.5E-21 | 100 | 222 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 11.503 | 102 | 228 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MEGGASNEVA ESSKKIGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60
VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA NTQYYQQESS KLRRQIRDIQ 120
NLNRHILGES LGSLNLKELK NLESRLEKGI SRVRSKKVNH YSFIDQTSMF GYIVFTTLSD 180
YSCPLHLIFV FPQHEMLVAE IEYMQKREIE LQNDNMYLRS KITERVGLQQ QESSVIHQGT 240
VYESGVSSSH QSDQYNRSYI PVNLLEPNQN PSDQDQPPLQ LV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1egw_A | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 2e-19 | 17 | 84 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1tqe_P | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 5f28_A | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
| 5f28_B | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
| 5f28_C | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
| 5f28_D | 2e-19 | 16 | 84 | 1 | 69 | MEF2C |
| 6c9l_A | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-19 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU424343 | 0.0 | EU424343.1 Brassica napus shatterproof 2 (SHP2) mRNA, SHP2-b allele, complete cds. |
| GenBank | JQ973083 | 0.0 | JQ973083.1 Brassica napus Shatterproof (SHP2b) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Pabón-Mora N,Wong GK,Ambrose BA
Evolution of fruit development genes in flowering plants.
Front Plant Sci, 2014. 5: p. 300
[PMID:25018763] - Rathnakumar K, et al.
Angiopoietin-2 mediates thrombin-induced monocyte adhesion and endothelial permeability.
J. Thromb. Haemost., 2016. 14(8): p. 1655-67
[PMID:27241812] - Balanzà V,Roig-Villanova I,Di Marzo M,Masiero S,Colombo L
Seed abscission and fruit dehiscence required for seed dispersal rely on similar genetic networks.
Development, 2016. 143(18): p. 3372-81
[PMID:27510967] - Ehlers K, et al.
The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
PLoS ONE, 2016. 11(10): p. e0165075
[PMID:27776173] - Sehra B,Franks RG
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
Front Plant Sci, 2017. 8: p. 1712
[PMID:29085379] - Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
Development, 2018.
[PMID:29361563]
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