 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10017012m |
| Common Name | EUTSA_v10017012mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
GATA |
| Protein Properties |
Length: 296aa MW: 32707.6 Da PI: 9.8152 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10017012m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 63.8 | 2e-20 | 214 | 248 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
Thhalv10017012m 214 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRL 248
*******************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MNNGSWLPEE DFKGLGDNFF DDLINHLDFP LEDIETGSGD GDWDAEFQNL VPPSLDVLTS 60
LSSEFTHGST CKGQRVGVQK PVPVLKQSSS SEVDSSLPDV KVSKLFQSSS PVSVLESANG 120
SVSFQNPNRA QRLALPVKGI RSKRKRPTEP RIRSLLTFAS GMSQQFAPDE SESETYLSSE 180
NSSKKRRKKS KNRAAHSVSY SPEPFNADGT VRKCTHCETT KTPQWREGPS GPKTLCNACG 240
VRFRSGRLVP EYRPASSPTF IPTVHSNSHR KIIEMRRKDG DQFKTGRIYA VRSRA*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 183 | 187 | KKRRK |
| 2 | 183 | 188 | KKRRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493441 | 8e-62 | AB493441.1 Arabidopsis thaliana At1g08010 mRNA for hypothetical protein, partial cds, clone: RAAt1g08010. |
| GenBank | AC026875 | 8e-62 | AC026875.4 Genomic sequence for Arabidopsis thaliana BAC T6D22 from chromosome I, complete sequence. |
| GenBank | AK229366 | 8e-62 | AK229366.1 Arabidopsis thaliana mRNA for putative GATA transcription factor 3, complete cds, clone: RAFL16-61-D15. |
| GenBank | BT014974 | 8e-62 | BT014974.1 Arabidopsis thaliana At1g08010 gene, complete cds. |
| GenBank | BT015713 | 8e-62 | BT015713.1 Arabidopsis thaliana At1g08010 gene, complete cds. |
| GenBank | CP002684 | 8e-62 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
