PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10017007m
Common NameEUTSA_v10016998mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 298aa    MW: 32398.7 Da    PI: 7.9706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10017007mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11230275655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  Thhalv10017007m 230 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIKGLQ 275
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.056224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-14227288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-11228279No hitNo description
Gene3DG3DSA:4.10.280.102.5E-13229286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13230280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-9230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MYPPSSSSKS TPPNDADNDR YDSAAGATRD FSSLNSQTLH NPPARQQHNP NVGGHYFPGD  60
PSSFGPDSGA SPSLFRHRSS PAGFYDQHLP TDPNGRANGG YGGGGERGPS RLKSELRFSG  120
GSSSSHQEHN SLPRISEVEA ATAAINGVAS TSMNFGNDHN NWDNSAHISF TIDETGKRSK  180
TTDFFTLETQ FSMPQTSLEM ARMESLMNIP EDSVPCKVRA KRGCATHPRS IAERERRTRI  240
SGKLKKLQEL VPNMDKQTSY ADMLDLAVEH IKGLQHQVES LEKGMERCTC GAACKKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10017007m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044502e-81AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026852e-81CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411590.10.0transcription factor bHLH129 isoform X2
SwissprotQ9ZW811e-132BH129_ARATH; Transcription factor bHLH129
TrEMBLV4MD050.0V4MD05_EUTSA; Uncharacterized protein
STRINGXP_006411590.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.21e-140bHLH family protein