 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10016853m |
| Common Name | EUTSA_v10016853mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
WRKY |
| Protein Properties |
Length: 361aa MW: 40862.3 Da PI: 10.2723 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10016853m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 98.2 | 5.4e-31 | 294 | 352 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60
D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp ++++tYe eHnh+k
Thhalv10016853m 294 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 352
99***********************9988****************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MEEIEGTNRA AVESCHRVLN LLCRPQQQDH GYDRSLVSET REAVFRFKRV ASLLNKSVGH 60
ARFRRAKKLQ THLSQSIFLD PCHQRTELPS PLKTPVLRSG FHELSLRPTD SLTLGTRSFS 120
LNSDSKAPLL QLSQQAMPSS NYPRLFPEHQ QQQQLHERLQ AHHLHQQQQQ QQQQKHQAEF 180
MLRKCNGGIS LSFDNSSCTP TMSSTRSFVS SLSIDGSVAN IEGKNSFHLV GVPSSTDQSS 240
QHSKRKCFMK GDEHGSIKCG SSSRCHCSKK RKHRVRRSIR VPAISNKVAD IPPDDYSWRK 300
YGQKPIKGSP YPRGYYKCSS MRGCPARKHV ERCLEDPAML IVTYEAEHNH PKLPSQTVTT 360
*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353039 | 0.0 | AK353039.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E12. |
