PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016804m
Common NameEUTSA_v10016804mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 380aa    MW: 41995.9 Da    PI: 8.3751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016804mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05133156123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg++F+   +L++Hi + H
  Thhalv10016804m 133 YSCTSCGEVFPKINLLEHHIAVkH 156
                      99******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.452133161IPR007087Zinc finger, C2H2
PROSITE patternPS000280135156IPR007087Zinc finger, C2H2
SuperFamilySSF563998.25E-12158378No hitNo description
Gene3DG3DSA:3.90.228.101.0E-4307378IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAARKLGSLI RQHFLSLIFL FLGCFFFSRG GDCRHKRRKK KLRTVSSSSP SASGLSSSWS  60
YLKRVFLSTT RISKSRNQTH PNGPTLTSAR SSQNSLVTLV QPDTTNQPDP ETRIETGFSD  120
SDSLFLPLRS EIYSCTSCGE VFPKINLLEH HIAVKHAVSE LIDGESSTNI VKIIFKSGWP  180
EQGNKIPEIH RILKVHNSQK ILTRFEEYRE FVKAKAARSG GGRRWDDERC VADGNELLRF  240
YCSTFMCDLG QNGNSSLCGH QYCSICGIIG SGFSPKLDGI ATLATGWRGH VAVPEEVEEE  300
FGFMNVKRAM LVCRVVAGRV GCDLIPDDDD VDKSDGGFDS LVGQGTRSKS GALLRIDDEE  360
LLVFNPRAVL PCFVIVYTV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13342RHKRRKKKLR
23641RRKKKL
33642RRKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016804m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531330.0AK353133.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410025.10.0uncharacterized protein LOC18027693
TrEMBLE4MX860.0E4MX86_EUTHA; mRNA, clone: RTFL01-11-B23
TrEMBLV4MG390.0V4MG39_EUTSA; Uncharacterized protein
STRINGXP_006410025.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.10.0C2H2 family protein