PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016733m
Common NameEUTSA_v10016733mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family G2-like
Protein Properties Length: 410aa    MW: 46396.8 Da    PI: 7.3563
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016733mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.3e-3287140255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Thhalv10016733m  87 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 140
                      8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-3083141IPR009057Homeodomain-like
PROSITE profilePS5129413.32183143IPR017930Myb domain
SuperFamilySSF466893.94E-1684142IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-2487142IPR006447Myb domain, plants
PfamPF002499.9E-1088139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MRSSSQNSEN SKTCPSTNFK ATTKKVEDKD EEDDEEEEED EEERSGDQSP SSNSYVEESG  60
SHHHHNHHDQ IKKNGGSVRP YNRSKTPRLR WTPELHLCFL QAVERLGGPD RATPKLVLQL  120
MNVKGLSIAH VKSHLQMYRS KKTDDPNQGD QGFSFGEGAG YTYNLSQLPM LQSFDQRPST  180
SLGYGSGSWT DHRRQIYRSP WRGLTARDNT RTRQTFFGSQ PGERFHGVSN SILDDKNKTI  240
SFRINSHEAA HENNGVAEAF PKIQRTFLEG MKTFNKSWGQ SLSSNPNSST ATRPQDHYAT  300
TLNSYQRDNP RVAEVSENVL KRKRLVLSDD CNKVDQDLDL SLSLKVPRIH DNLGGCLLED  360
DRKEHDDHED SKVLSLSLSS SSLSKLDRTT RKEDHNDHKK RDFGLGKSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016733m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070200.0AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence.
GenBankAF0852790.0AF085279.1 Arabidopsis thaliana ABA-regulated gene cluster, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411281.10.0uncharacterized protein LOC18027511
TrEMBLV4M8S10.0V4M8S1_EUTSA; Uncharacterized protein
STRINGXP_006411281.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein