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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10016713m |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
WRKY |
| Protein Properties |
Length: 423aa MW: 47498.3 Da PI: 8.1759 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10016713m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 79 | 5.4e-25 | 234 | 294 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqKe+ +++fprsY+rCt++ gC+++k+v+++++ p+++ itY g+H+++
Thhalv10016713m 234 ADRYAWRKYGQKEILNTKFPRSYFRCTHKptqGCKATKHVQKQEQCPEMFLITYIGHHTCN 294
599*************************9999***************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0031347 | Biological Process | regulation of defense response |
| GO:1900056 | Biological Process | negative regulation of leaf senescence |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MDDIIPPHRC DISKTLPMAS SFDYFSLLIR EKAKKQNPEK IYLSSLHYIT PFSHPQIIIP 60
RKKKPKTKKS IDPLNCCKPK KRKEMDSNSN NTIKRKLVDQ LVQGYEFATR LQLLLSHQHS 120
NHSTDQTRIV SGSGSVPGDL DPVDELLAKI LGSFHKTISV LDSSDTVADL SVPIAVEGSR 180
NASCGDDSAA PASCNGGDSV DSRKRLGVSK GKRGCYTRKK RSHTWTVEAR RIDADRYAWR 240
KYGQKEILNT KFPRSYFRCT HKPTQGCKAT KHVQKQEQCP EMFLITYIGH HTCNANDQTR 300
AKTEPFDHKI MDSDNTILAE TIAQGHVNVE VQEQEKNISS VTVAGAGMVK EEENNNGDQN 360
KDYCEGSSTD GDLSLVWQDA LMFDDHQHHQ NPYYHGKTST IAQQFSFIDN DQLSSLFDSY 420
CA*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 202 | 220 | RKRLGVSKGKRGCYTRKKR |
| 2 | 218 | 222 | KKRSH |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Together with WRKY70, negative regulator of developmental senescence, probably via the regulation of several senescence-associated markers genes (PubMed:22268143). Positive regulator of EDS1-dependent defense against E.amylovora (PubMed:22316300). In collaboration with WRKY70, prevents stomatal closure and, consequently, osmotic stress tolerance (PubMed:23815736). Together with WRKY46 and WRKY70, promotes brassinosteroid (BR)-regulated plant growth but prevent drought response by modulating gene expression (PubMed:28576847). Negative regulator of SA biosynthesis (PubMed:28837631). Prevents defense response to the necrotrophic pathogens P.carotovorum and B.cinerea, but promotes defense against biotrophic/hemibiotrophic pathogens P.syringae pv. tomato (Pst) DC3000, probably by regulating negatively the jasmonic acid (JA)/ethylene (ET) and positively the salicylic acid (SA) signaling pathways (PubMed:28837631). {ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:23815736, ECO:0000269|PubMed:28576847, ECO:0000269|PubMed:28837631, ECO:0000303|PubMed:28837631}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by reactive oxygen species (ROS) and salicylic acid (SA) (PubMed:22268143). Early but transient accumulation after osmotic stress (e.g. polyethylene glycol, PEG) (PubMed:23815736). Up-regulated by E.amylovora (PubMed:22316300). {ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22316300, ECO:0000269|PubMed:23815736}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK352878 | 0.0 | AK352878.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-J17. |
| Publications
? help Back to Top |
- Wang Y,Joshi T,Zhang XS,Xu D,Chen L
Inferring gene regulatory networks from multiple microarray datasets.
Bioinformatics, 2006. 22(19): p. 2413-20
[PMID:16864593] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643] - Timmermann T, et al.
Paraburkholderia phytofirmans PsJN Protects Arabidopsis thaliana Against a Virulent Strain of Pseudomonas syringae Through the Activation of Induced Resistance.
Mol. Plant Microbe Interact., 2017. 30(3): p. 215-230
[PMID:28118091] - Chen J, et al.
Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.
Plant Cell, 2017. 29(6): p. 1425-1439
[PMID:28576847] - Li J,Zhong R,Palva ET
WRKY70 and its homolog WRKY54 negatively modulate the cell wall-associated defenses to necrotrophic pathogens in Arabidopsis.
PLoS ONE, 2017. 12(8): p. e0183731
[PMID:28837631]
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