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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10016692m |
| Common Name | EUTSA_v10016692mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
WRKY |
| Protein Properties |
Length: 430aa MW: 47019.1 Da PI: 9.6546 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10016692m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 101 | 6.9e-32 | 161 | 216 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++v ei+Y+geHnh
Thhalv10016692m 161 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSM-EGQVSEIVYQGEHNHL 216
9***************************************.***************5 PP
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| 2 | WRKY | 103 | 1.7e-32 | 348 | 405 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
Thhalv10016692m 348 EDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 405
8********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009957 | Biological Process | epidermal cell fate specification |
| GO:0010214 | Biological Process | seed coat development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 430 aa
Download sequence Send
to blast |
MEVKESERVV IAKPVASRPS CSSFRTFTEL LTDSVTVSPQ SNCHDTVDAA IRPKTLRFKQ 60
PAAPVSSPRA DGNGIGKSCD DSDSKNYVVY KPKAKLVSKA TVSVLANMLQ GNPQQTWRQT 120
EAAAYGKSVS QGTHRAGTNL VQKVPSFTES ETSIGDRSSV DGYNWRKYGQ KQVKGSECPR 180
SYYKCTHPKC PVKKKVERSM EGQVSEIVYQ GEHNHLKPSC PLPRRASSSS SSGLQKPPKG 240
LVSEGSMGQD TNSVYHQSLW SSQSSDSSQN RTEKMNEGCV VTPFEFAVPR SANSTGGTSD 300
SGCRSSQCDE GSIGGELDDP SRSKRRKNEK QSSEAGVSQG SVESDSLEDG FRWRKYGQKV 360
VGGNAYPRSY YRCTSANCRA RKHVERASDD PRAFITTYEG KHNHHLLLRP PTSSTNLPFN 420
STQHSKQPI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
| Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Simon M, et al.
Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
Plant Cell, 2013. 25(9): p. 3175-85
[PMID:24014549] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128] - Verweij W, et al.
Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
Plant Cell, 2016. 28(3): p. 786-803
[PMID:26977085] - Gonzalez A, et al.
TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
Dev. Biol., 2016. 419(1): p. 54-63
[PMID:27046632] - Hassani-Pak K, et al.
Developing integrated crop knowledge networks to advance candidate gene discovery.
Appl Transl Genom, 2016. 11: p. 18-26
[PMID:28018846]
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