PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016626m
Common NameEUTSA_v10016626mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family AP2
Protein Properties Length: 462aa    MW: 50330.1 Da    PI: 6.6514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016626mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17148197155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Thhalv10016626m 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
                      78*******************......55************************997 PP
2AP239.81.1e-12240287152
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ +
  Thhalv10016626m 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIN 287
                      89********.7******5553..2.26**********99*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-9148197IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15148205IPR016177DNA-binding domain
CDDcd000187.51E-11149204No hitNo description
Gene3DG3DSA:3.30.730.107.2E-17149205IPR001471AP2/ERF domain
SMARTSM003804.7E-32149211IPR001471AP2/ERF domain
PROSITE profilePS5103217.82149205IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-16240299IPR016177DNA-binding domain
PfamPF008473.9E-8240287IPR001471AP2/ERF domain
CDDcd000186.58E-23240300No hitNo description
PROSITE profilePS5103215.237241298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15241299IPR001471AP2/ERF domain
SMARTSM003802.6E-29241304IPR001471AP2/ERF domain
PRINTSPR003671.5E-5242253IPR001471AP2/ERF domain
PRINTSPR003671.5E-5280300IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY LDRQTSEGSG NRAEESGTST SSVINADADD DSCSARAFTL  60
SFDILKVGSS GGDESAAASI SGVTKEFFPV AGDCGHLRDV EGSSSRSWID LSFDGSGHHG  120
EMKSMAPAPA PAPVPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGVDA DINFTLADYE EDMKQVQNLS KEEFVHILRR QSTGFSRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAAINSNG REAVTNFELS  300
SYQNEINSNE GGHDKLDLNL GISLSPGNAP KQRLFHYPSN TYETQRGVSL TIDNEFIGKP  360
VNTPLPYGSS DHRSYWNGAC PSYHNSVEGR VASEKRSEGE GGMMSSSSNW GWQRPQPSLA  420
GGAQPPLFSV AAAASSGFSH FRQQPPPSDN ASSRGYFYPQ P*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016626m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409883.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV4NWU00.0V4NWU0_EUTSA; Uncharacterized protein
STRINGXP_006409883.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7