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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10016626m |
| Common Name | EUTSA_v10016626mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
AP2 |
| Protein Properties |
Length: 462aa MW: 50330.1 Da PI: 6.6514 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10016626m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.6 | 5.7e-17 | 148 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
Thhalv10016626m 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197
78*******************......55************************997 PP
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| 2 | AP2 | 39.8 | 1.1e-12 | 240 | 287 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ +
Thhalv10016626m 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIN 287
89********.7******5553..2.26**********99*********975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 462 aa
Download sequence Send
to blast |
MLDLNLDADS PESTQYGDSY LDRQTSEGSG NRAEESGTST SSVINADADD DSCSARAFTL 60
SFDILKVGSS GGDESAAASI SGVTKEFFPV AGDCGHLRDV EGSSSRSWID LSFDGSGHHG 120
EMKSMAPAPA PAPVPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180
AHAAARAYDR AAIKFRGVDA DINFTLADYE EDMKQVQNLS KEEFVHILRR QSTGFSRGSS 240
KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAAINSNG REAVTNFELS 300
SYQNEINSNE GGHDKLDLNL GISLSPGNAP KQRLFHYPSN TYETQRGVSL TIDNEFIGKP 360
VNTPLPYGSS DHRSYWNGAC PSYHNSVEGR VASEKRSEGE GGMMSSSSNW GWQRPQPSLA 420
GGAQPPLFSV AAAASSGFSH FRQQPPPSDN ASSRGYFYPQ P*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
