PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10016372m
Common NameEUTSA_v10016372mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 632aa    MW: 70091.1 Da    PI: 7.3584
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10016372mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08295315526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  Thhalv10016372m 295 PCPEFRK-GSCPKGDSCEYAHG 315
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.9E-1471213IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.03E-12106186IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.735109207IPR020683Ankyrin repeat-containing domain
PfamPF127965.3E-7109176IPR020683Ankyrin repeat-containing domain
SMARTSM002484.4E-4109139IPR002110Ankyrin repeat
CDDcd002041.01E-11111207No hitNo description
SMARTSM002483.9144176IPR002110Ankyrin repeat
PROSITE profilePS5010313.976290317IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-5290316IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5295315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6295316IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.465325349IPR000571Zinc finger, CCCH-type
SMARTSM0035637325348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MNSNLENSTY KSDCLVSFSL RLFSPLKLTG EMCGSKSNLC SSKTLTEAEL MRRKSEEEEG  60
VAAATCLLEL AACDDLPSFR REIEEKSLEI DEPGFWYCRR VGSKKMGFEE RTPLMVAAMY  120
GSIDVLNYII ATGKSDVNRV FGDEKVTALH CAVSGCSVSI VEVIKILLDA SASPNCLDAN  180
GNKPVDLLVR ASRFVPNQSR KAVEILLTGN HGSVSLMEDE EEEVKSVVMT KYPADASLPD  240
INEGVYGTDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYP YTCVPCPEFR  300
KGSCPKGDSC EYAHGVFESW LHPAQYRTRL CKDETGCARR VCFFAHRRDE LRPVNASTGS  360
AMVSPRSCNQ SPEMPVMSPL TLGSSPMNSP MANNGVPLSP RNNGGLWQNR VNSLTPPPLQ  420
LNSSRLKSSL SARDMDVEME LRLRRLSDYK SSNLEESFGS YDSSSSVMQL QSPSRHSQMN  480
HYPSSPVRQG FESSAAMAAA VMKARSSAFA KRSLSFKPAP VTSSNVSDWG SPNGKLEWGM  540
QREELNKLRR SASFGIHGNG NNMSRPARDY SDEPDVSWVN SLVKESAPER AFGMTERVGN  600
TVNGAEGRDR FKLPSWAEQM YIDHEKQQIV A*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10016372m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534400.0AK353440.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411267.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLV4M8Q70.0V4M8Q7_EUTSA; Uncharacterized protein
STRINGXP_006411266.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein