PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10016023m

Common Name

EUTSA_v10016023mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

C2H2

Protein Properties

Length: 436aa MW: 48268.3 Da PI: 9.1777

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10016023m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Thhalv10016023m 38 FFCEICSKGFQREQNLQLHKRGH 60 67******************988 PP
2	zf-C2H2	10.6	0.0018	116	137	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C+k + s+Lk H + + Thhalv10016023m 116 KCDKCSKKYAVISDLKAHSKIC 137 8*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.29E-8	37	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-5	37	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	1.8E-5	38	60	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.019	38	60	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.741	38	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	80	110	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.7E-4	103	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.29E-8	110	135	No hit	No description
SMART	SM00355	100	115	135	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
LSPLTHLRER ETTQEIQAHP DAEVVALSPK SLMATNRFFC EICSKGFQRE QNLQLHKRGH 60 NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH DPARALGDLT GIKKHFSRKH GEKKLKCDKC 120 SKKYAVISDL KAHSKICGNR EYRCDCGTLF SRKDSFITHR AFCDSLAEES AKFVSSVPSP 180 LAANSTISIA ATTNNPVLIQ SHLDQSLTRT AGFNVNPNQT TFLGHNFTTS DQIPLQANAF 240 ALPSPQSPRG TSDSVHNLWK LKGDGSQSWL LDEYNNKNIL HERISKNQED EIKKGIIYSG 300 SSPTGPNIAS LFLNNQEGHV SSSSATTLLQ KAAQMGSSSS SNANPMFGLM TSSIFSNDMP 360 NFSCFKPKNK EEELTRDFLG VGSRRGDQQR LHHHHHLSSS VPLTVNHDIL KLATTTVGGE 420 STVDIASDSE NTRFC*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

LSPLTHLRER ETTQEIQAHP DAEVVALSPK SLMATNRFFC EICSKGFQRE QNLQLHKRGH  60
NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH DPARALGDLT GIKKHFSRKH GEKKLKCDKC  120
SKKYAVISDL KAHSKICGNR EYRCDCGTLF SRKDSFITHR AFCDSLAEES AKFVSSVPSP  180
LAANSTISIA ATTNNPVLIQ SHLDQSLTRT AGFNVNPNQT TFLGHNFTTS DQIPLQANAF  240
ALPSPQSPRG TSDSVHNLWK LKGDGSQSWL LDEYNNKNIL HERISKNQED EIKKGIIYSG  300
SSPTGPNIAS LFLNNQEGHV SSSSATTLLQ KAAQMGSSSS SNANPMFGLM TSSIFSNDMP  360
NFSCFKPKNK EEELTRDFLG VGSRRGDQQR LHHHHHLSSS VPLTVNHDIL KLATTTVGGE  420
STVDIASDSE NTRFC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-30	111	175	3	67	Zinc finger protein JACKDAW
5b3h_F	7e-30	111	175	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10016023m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024012450.1	0.0	protein indeterminate-domain 13
Swissprot	F4JYZ8	0.0	IDD13_ARATH; Protein indeterminate-domain 13
TrEMBL	V4LR07	0.0	V4LR07_EUTSA; Uncharacterized protein (Fragment)
STRING	XP_006400845.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thhalv10016023m
Entrez Gene	18016918

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]