PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10015975m

Common Name

EUTSA_v10015975mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bZIP

Protein Properties

Length: 307aa MW: 34503 Da PI: 9.5832

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015975m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.7e-10	24	62	7	45
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Thhalv10015975m 24 LRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 62 59************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.8E-4	15	81	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	21	65	No hit	No description
SuperFamily	SSF57959	6.54E-7	24	65	No hit	No description
Pfam	PF00170	5.3E-7	24	62	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	25	40	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.749	25	64	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.0E-33	105	179	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGDISPRTSF STDGETDHNN IMTLRRLAQN REAARKSRLR KKAYVQQLEN SRLKLTQLEQ 60 ELQRARQQGV FISSSGDQAH STAGNGAMAF DVEYRRWQED KNRKMKELSS ALDAHASDAE 120 LRLIVDAVIA HYEELFRIKS NAAKNDVFHL LSGMWKTPAE RCFLWLGGFR SSEILKLIAN 180 KLELLTEQQS QELNNLQESS QQAEDAMSQG MDNLQQSLSD SLSSGTLGSS SSGNVASYMG 240 QMAMAMGKLG TLEGFIRQAD NLRLQTYQQM LRILTTRQSA RALLAIHDYS LRLRALSSLW 300 LARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015975m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY058830	0.0	AY058830.1 Arabidopsis thaliana AT5g06960/MOJ9_13 mRNA, complete cds.
GenBank	AY143864	0.0	AY143864.1 Arabidopsis thaliana At5g06960/MOJ9_13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024012386.1	0.0	transcription factor TGA5
Refseq	XP_024012387.1	0.0	transcription factor TGA5
Refseq	XP_024012388.1	0.0	transcription factor TGA5
Swissprot	Q39163	0.0	TGA5_ARATH; Transcription factor TGA5
TrEMBL	V4LE01	0.0	V4LE01_EUTSA; Uncharacterized protein
STRING	XP_006399174.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	1e-143	OCS-element binding factor 5

Link Out ? help Back to Top
Phytozome	Thhalv10015975m
Entrez Gene	18017394

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Walper E,Weiste C,Mueller MJ,Hamberg M,Dröge-Laser W Screen Identifying Arabidopsis Transcription Factors Involved in the Response to 9-Lipoxygenase-Derived Oxylipins. PLoS ONE, 2016. 11(4): p. e0153216 [PMID:27073862] Huang LJ, et al. Ectopically expressed glutaredoxin ROXY19 negatively regulates the detoxification pathway in Arabidopsis thaliana. BMC Plant Biol., 2016. 16(1): p. 200 [PMID:27624344]