PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015954m
Common NameEUTSA_v10015954mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 139aa    MW: 15947.1 Da    PI: 10.2343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015954mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.48e-21101364118
              NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka..eekewyfFskrdkkya....tgkrknr.atk.....sgyW 83 
                      G+ F+P+d+el+ +yL +k++g k    ++i + d+y   Pw L+ + +      ++ wy+F++r + ++    +gk+++r +t       g W
  Thhalv10015954m  10 GIFFNPSDKELIEHYLDHKLKGIKGAN-DIIVDKDVYAKAPWLLDhNnH--PlfMTDVWYYFTTRTQISEkkigRGKNSKRrITGgdndgCGSW 100
                      888*******************99666.89**************83232..1335679*****998765533335555555365566656799* PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapk.gek 118
                      k   ++  + +++++ +g+kktL+f k ++ k  +k
  Thhalv10015954m 101 KPNTTEDIIDKETRKIIGTKKTLTFTKSKKTKkQQK 136
                      *999988888889999**********7755440445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.4317139IPR003441NAC domain
SuperFamilySSF1019412.48E-2110133IPR003441NAC domain
PfamPF023656.7E-1410131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MSGNRKEDGG IFFNPSDKEL IEHYLDHKLK GIKGANDIIV DKDVYAKAPW LLDHNNHPLF  60
MTDVWYYFTT RTQISEKKIG RGKNSKRRIT GGDNDGCGSW KPNTTEDIID KETRKIIGTK  120
KTLTFTKSKK TKKQQKTGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015954m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400942.22e-80uncharacterized protein LOC18019346
TrEMBLV4N9E76e-97V4N9E7_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400943.19e-98(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-11NAC domain containing protein 88