PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015772m
Common NameEUTSA_v10015772mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 121aa    MW: 13411.5 Da    PI: 8.2913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015772mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601118.4e-35795188
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                     +C aCk+lrrkC++dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA  r+ dPvyG+v+++++lqqq +
  Thhalv10015772m  7 SCGACKFLRRKCNSDCVFSPYFSYEQaSSHFAAVHKIFGASNVSKHLLHLPLHQRSAAAITISYEALSRMCDPVYGCVAHVFALQQQSQ 95
                     6***********************9978**********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.7886109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-32796IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNS DCVFSPYFSY EQASSHFAAV HKIFGASNVS KHLLHLPLHQ  60
RSAAAITISY EALSRMCDPV YGCVAHVFAL QQQSQITLEI LYEKLISDVC FFGLRNQMYI  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3131107116LOB family transfactor Ramosa2.1
5ly0_B2e-3131107116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015772m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012025.13e-63LOB domain-containing protein 33
SwissprotQ9LHS81e-59LBD33_ARATH; LOB domain-containing protein 33
TrEMBLV4N5192e-83V4N519_EUTSA; Uncharacterized protein
STRINGXP_006399068.13e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-62LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]