PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

WOX

Protein Properties

Length: 272aa MW: 30093.3 Da PI: 6.5741

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10015651m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.8	2.4e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ Thhalv10015651m 28 RSRWSPKPEQILILESIFNSgIVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.2	2e-34	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q Thhalv10015651m 27 VRSRWSPKPEQILILESIFNSGIVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-14	23	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.418	24	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-8	26	94	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDQEGSSKSH TGQGLSHSVP SNSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKEETVRI 60 RKMLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAATAAA TTTRGAAEHQ HMTNMSMHQY 120 PYSNSEIDLG FGSCSNSSAN NFFNESSSQV SSFLLELASS SASGGNNSME NLFTMYGHES 180 DHHQQHSSID ASILSPSDQN SDFHYQQGLM TVFINGVPTE IKEGAIDMKA MFGENLVLLH 240 SSGLPLPTDE FGFLMHSLQH GQAYFLVPRQ T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10015651m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251403	0.0	AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400324.1	0.0	WUSCHEL-related homeobox 12 isoform X2
Swissprot	Q8GY25	1e-124	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	V4LH82	0.0	V4LH82_EUTSA; Uncharacterized protein
STRING	XP_006400324.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-106	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	Thhalv10015651m
Entrez Gene	18019638

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]