PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015599m
Common NameEUTSA_v10015599mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 284aa    MW: 32772.3 Da    PI: 9.0318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015599mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.73.9e-22461974128
              NAM   4 GfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkya....tgkrknr.atk....sgyW 83 
                      G+ F+P+d+el+ +yLk+k++gk+ ++++++i + d+y  ePw L++  +      ++ wy+F++r + ++     gk+++r +t      g W
  Thhalv10015599m  46 GVFFDPSDKELLEHYLKRKLKGKSkTHEKDIIVDKDVYAKEPWLLDHnnN--PlfMTNVWYYFTTRTQISEkkigCGKNSKRrITGdndgGGSW 137
                      899*******************996556678**************84232..1336789*****99876663333455555536666777999* PP

              NAM  84 katgkdkevlskkgelvglkktLvfy.....kgrapkge...............ktdWvmheyrl 128
                      k   +++ + +++++ +g+kktL+f      k      +                ++W+m ey l
  Thhalv10015599m 138 KPNATENIIDKETRKIIGTKKTLTFTksknkK-----KKqktgdgtscaivpgsDSSWIMTEYML 197
                      ***9999999989999**********554431.....2222333445555555588899999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510057.641124IPR003441NAC domain
PROSITE profilePS5100529.33743215IPR003441NAC domain
SuperFamilySSF1019415.23E-2745213IPR003441NAC domain
PfamPF023651.1E-1646196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTEYMLPEEA NKFQELVLCK IHKIPKINRS KKKDDRHRPR EEGDGGVFFD PSDKELLEHY  60
LKRKLKGKSK THEKDIIVDK DVYAKEPWLL DHNNNPLFMT NVWYYFTTRT QISEKKIGCG  120
KNSKRRITGD NDGGGSWKPN ATENIIDKET RKIIGTKKTL TFTKSKNKKK KQKTGDGTSC  180
AIVPGSDSSW IMTEYMLPED KNKFQQLVLC KIHMINKFEN MDDHHEPSEE GNMAHQVDAH  240
ATTGTVPERP LEKDAQAGAT SKFTEDWFFY VMKQPTIEDW MLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-144621320163NO APICAL MERISTEM PROTEIN
1ut4_B3e-144621320163NO APICAL MERISTEM PROTEIN
1ut7_A3e-144621320163NO APICAL MERISTEM PROTEIN
1ut7_B3e-144621320163NO APICAL MERISTEM PROTEIN
4dul_A3e-144621320163NAC domain-containing protein 19
4dul_B3e-144621320163NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015599m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400942.20.0uncharacterized protein LOC18019346
TrEMBLV4KWL50.0V4KWL5_EUTSA; Uncharacterized protein
STRINGXP_006400942.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.11e-11NAC domain containing protein 19