PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015535m
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 550aa    MW: 60451.9 Da    PI: 5.1766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015535mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.45.3e-1341314901374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lv++L++cAeav++++l+la+al++r+  la++++ +m ++a+yf+eALa+r++r        ++ps+++ + s +e+  +  f+e +P+lkf+
  Thhalv10015535m 131 LVQALVACAEAVQQENLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSAAIDLSFDEIL-QMHFYESCPYLKFA 215
                      689****************************************************........6666666444555544.457*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+taNqaIleav++++ +H+iD++++qG+QWpaL+qaLa Rp+gpps+R+Tgvgsp+  +++ +e++g++L+++A+++gv+fefn l+a+rl+d
  Thhalv10015535m 216 HFTANQAILEAVATARGIHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGSPS--NRDGIEQLGWKLSQLAQAIGVEFEFNGLTAERLSD 307
                      *******************************************************88..9********************************** PP

             GRAS 189 leleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      le+++++++p  E l+Vn+v++lh ll++++s+e+    +L +vk ++P +v+vveqea+hn+  Flerf eal+yys+lfdsle +l   s++
  Thhalv10015535m 308 LEPDMFETRPeSERLVVNSVFELHPLLARPGSIEK----LLATVKAVKPSIVTVVEQEANHNGVVFLERFNEALHYYSSLFDSLEDGLILPSQD 397
                      **********9************************....************************************************9777766 PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r ++++++lgr+i nvva+eg er+erhetl++Wr+r+++aGF+pv+l+++a kqa+lll+ ++ +dgyrvee++gsl+l W+++pL+++SaW+
  Thhalv10015535m 398 R-VMSEVYLGRQILNVVAAEGVERVERHETLAQWRKRMGSAGFNPVNLGSDAFKQASLLLALFAgGDGYRVEENEGSLMLAWQTKPLIAASAWK 490
                      6.567778*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.4E-362698No hitNo description
PfamPF120412.2E-322691IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.278105469IPR005202Transcription factor GRAS
PfamPF035141.8E-131131490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTKRNHRETS VEAPSMGKQL EDDNMDELLA VLGYKVRSSD MADVAQKLEQ LEMVLSNDDF  60
LGSNAFNDTV HYNPSDLSGW AETMLSELSS TTTSITSKRI RLGPWCDSAS SESTQPVVVL  120
AVDSQETGVR LVQALVACAE AVQQENLSLA DALVKRVGSL AASQAGAMGK VATYFAEALA  180
RRIYRIHPSS AAIDLSFDEI LQMHFYESCP YLKFAHFTAN QAILEAVATA RGIHVIDLGL  240
NQGMQWPALM QALALRPGGP PSFRLTGVGS PSNRDGIEQL GWKLSQLAQA IGVEFEFNGL  300
TAERLSDLEP DMFETRPESE RLVVNSVFEL HPLLARPGSI EKLLATVKAV KPSIVTVVEQ  360
EANHNGVVFL ERFNEALHYY SSLFDSLEDG LILPSQDRVM SEVYLGRQIL NVVAAEGVER  420
VERHETLAQW RKRMGSAGFN PVNLGSDAFK QASLLLALFA GGDGYRVEEN EGSLMLAWQT  480
KPLIAASAWK LSAVAAEWRR SYCCRFDTMS VTHLLSVPVL VESRSQALPR SKKCVSWCIP  540
LMKRDDLRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-6412648913377Protein SCARECROW
5b3h_D6e-6412648913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015535m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012483.10.0LOW QUALITY PROTEIN: DELLA protein RGL3
SwissprotQ9LF530.0RGL3_ARATH; DELLA protein RGL3
TrEMBLV4N7U70.0V4N7U7_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006400288.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.10.0RGA-like protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wild M,Achard P
    The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.
    Plant Signal Behav, 2013. 8(4): p. e23891
    [PMID:23425858]
  3. Shi H,Wei Y,Wang Q,Reiter RJ,He C
    Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis.
    J. Pineal Res., 2016. 60(3): p. 373-9
    [PMID:26887824]
  4. Shi H,Liu W,Wei Y,Ye T
    Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis.
    J. Exp. Bot., 2017. 68(5): p. 1239-1249
    [PMID:28158805]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]