PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015446m
Common NameEUTSA_v10015446mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C2H2
Protein Properties Length: 496aa    MW: 55100.9 Da    PI: 4.9956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015446mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001288110123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  Cgk+F++   L  H r H
  Thhalv10015446m  88 HICCECGKRFKSGKALGGHKRIH 110
                      68*****************9998 PP
2zf-C2H210.90.0014346368123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  C+ksF++   L  H  +H
  Thhalv10015446m 346 HVCVTCNKSFTSYQALGGHRASH 368
                      79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-484110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.06E-786162No hitNo description
PROSITE profilePS5015710.9788115IPR007087Zinc finger, C2H2
PfamPF139121.6E-788110IPR007087Zinc finger, C2H2
SMARTSM003550.1988110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
PROSITE profilePS501578.954140162IPR007087Zinc finger, C2H2
SMARTSM003552.9140162IPR015880Zinc finger, C2H2-like
PfamPF139120.006142163IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-7345368No hitNo description
PfamPF139124.5E-10346370IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556346373IPR007087Zinc finger, C2H2
SMARTSM003550.37346368IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576674.17E-7410437No hitNo description
PfamPF139127.5E-13415438IPR007087Zinc finger, C2H2
SMARTSM003550.2415437IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078415437IPR007087Zinc finger, C2H2
PROSITE patternPS000280417437IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEHLRGYKTN CGFSLGRPRF GSVKVRIPNF QPFIAEKGKD IEEDQVKEEE EEEEAKSIGL  60
EEEEEEDDGA KSMDLEEGDV EEEEEKKHIC CECGKRFKSG KALGGHKRIH VLEARKLAMV  120
RPKMESGVVG RSDQRDELEV DCCVCHKKFT SMKALYGHMR FHPDRGWKGV LPPPHPLGYS  180
SSSTLSIDDH DHGEFISSDY DDDDYDDNDK DEDDDDDENS ELWDNHWESE NVVDLKESIK  240
GWGKRARRSV FKVGESDLKD PRSEDMKDID AKDLLILATT AEAVDLDVTE TSDSHSVEEM  300
MMKKRRKKKK KRLSEMDKES SSTHDHHQLE VVVAAAEEGG GAREKHVCVT CNKSFTSYQA  360
LGGHRASHNK VKILENHQAR ANGEASLLGT EAIITGLASA QGSNTSLSSS NNGDHVCNIC  420
HKSFPTGQAL GGHKRCHWTG PVSSEAAATI AATTASTAPA AAYASQVTET VVQEVKKLKR  480
TFLEFDLNEL PPNEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301308MKKRRKKK
2302306KKRRK
3302307KKRRKK
4303311KRRKKKKKR
5304310RRKKKKK
6305311RKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015446m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401365.10.0zinc finger protein ZAT4
TrEMBLV4LSG10.0V4LSG1_EUTSA; Uncharacterized protein
STRINGXP_006401365.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-156C2H2 family protein