PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015404m
Common NameEUTSA_v10015404mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 428aa    MW: 48326.9 Da    PI: 8.9907
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015404mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-17103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+q+G + W+ I++++  gR +kqc++rw+++l
  Thhalv10015404m 103 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLE-GRAGKQCRERWHNHL 149
                      799*****************************.*************97 PP
2Myb_DNA-binding55.41.4e-17156197245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Thhalv10015404m 156 DGWSEEEERILVEAHTRIGNK-WAEIAKLIP-GRTENSIKNHWN 197
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.22498153IPR017930Myb domain
SuperFamilySSF466891.37E-29100196IPR009057Homeodomain-like
SMARTSM007175.0E-16102151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-27104156IPR009057Homeodomain-like
CDDcd001673.54E-15106149No hitNo description
PfamPF139219.4E-19106163No hitNo description
PROSITE profilePS5129418.888154204IPR017930Myb domain
SMARTSM007175.4E-15154202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-20157202IPR009057Homeodomain-like
CDDcd001671.72E-11158200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEHRRLVHGA APPLTAVERF LYGQKNDALF SKKQECSRDR SILKKTTAME IKNDNKENMT  60
FGPRKEKHLV VNGRSPTGDM VIKDATRDYQ NSTKKRPYKN LIKGQWTAEE DRKLIRLVRQ  120
HGERKWAMIS EKLEGRAGKQ CRERWHNHLR PDIKKDGWSE EEERILVEAH TRIGNKWAEI  180
AKLIPGRTEN SIKNHWNATK RRQNSKRKQK RQTNADNNDS DLSPSAKRPC ILQDYIKSID  240
NNDTNKGNGE NKTENTISVL STPNLDQIYS DGDSSSSVLG DPYDEELVYL QNIFANHPIS  300
LENIGLSQTS DEVNHSSSSG FMIKNPKSHS NVETHHHDQA MVAVPANTPH LASDIYLSYL  360
LNGTTSSYSN PHFPSSSSSA SSATVEFGGH SELLVPQANS TSERKEMDLI EMLSGYIQGS  420
NTCFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-451012032104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-4410120356158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-4410120356158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-451012032104C-Myb DNA-Binding Domain
1msf_C3e-451012032104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199210KRRQNSKRKQKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015404m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401032.10.0transcription factor MYB119
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLV4KWZ10.0V4KWZ1_EUTSA; Uncharacterized protein
STRINGXP_006401032.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]