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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015305m | ||||||||
Common Name | EUTSA_v10015305mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20140.2 Da PI: 6.7812 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.6e-05 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C++s++ L H++ H Thhalv10015305m 20 FKCKYCPRSYPKTQALSGHQNAH 42 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.26E-6 | 17 | 47 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 20 | 47 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 22 | 42 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSSWDSRSAS DVSDDGSATF KCKYCPRSYP KTQALSGHQN AHRREREITE RQQRAILAHV 60 NQPDPNPYPN PYVFPIHNAL TPGFEQPLCN VNKPDSLAVG YNQRTRSSSS DHARLQIHTS 120 QGLDRGWTIT ENPYQPLLSA PSPVSLDLCL GVGSSSQAQT RPKEPNDALA ANQEDDDLSL 180 KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10015305m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398971.1 | 1e-134 | uncharacterized protein LOC18018075 | ||||
TrEMBL | V4L9R9 | 1e-132 | V4L9R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398971.1 | 1e-133 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15741 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05120.1 | 1e-36 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015305m |
Entrez Gene | 18018075 |