PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10015297m
Common NameEUTSA_v10015297mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 187aa    MW: 21779.3 Da    PI: 8.207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10015297mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.8e-15251455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h e+Er+RR+++ s ++ Lr+llP ++   ++K s ++ + +Av+YIk+Lq
  Thhalv10015297m  2 MHREIERQRRQEMASLYASLRSLLPLNF--IQGKRSTSDQVNEAVNYIKYLQ 51
                     7*************************75..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.72E-11155No hitNo description
PROSITE profilePS5088814.297150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-12251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-12365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-7456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MMHREIERQR RQEMASLYAS LRSLLPLNFI QGKRSTSDQV NEAVNYIKYL QRKIKELSSR  60
RDELMLLSRG SFLDDSKDEM EMMNHVMVRQ CLVGVEIVFS SRCCGGQPQL SSVFQVLCEN  120
GLCLLNSISS IVDDRLIYTI HAEKWLHAIH FNRIYISSVV YYYPFKVSDM TLIDVAQLEE  180
RLTRMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10015297m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174306e-74AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109526e-74BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
GenBankBT0116406e-74BT011640.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012558.11e-110transcription factor bHLH36
SwissprotQ9FLI14e-83BH036_ARATH; Transcription factor bHLH36
TrEMBLV4LTY81e-135V4LTY8_EUTSA; Uncharacterized protein
STRINGXP_006401910.11e-135(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-85bHLH family protein