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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Thhalv10014905m |
| Common Name | EUTSA_v10014905mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
HD-ZIP |
| Protein Properties |
Length: 157aa MW: 17944.3 Da PI: 7.969 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10014905m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.6 | 2.1e-18 | 9 | 64 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r k+ ++t+eq+++Le++F n+++ + + eL++ lgL++rqV vWFqN+Ra+ k
Thhalv10014905m 9 RNKKKRLTQEQVRQLEKCFTLNKKLEPDLKLELSNMLGLPQRQVAVWFQNKRARSK 64
567889************************************************99 PP
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| 2 | HD-ZIP_I/II | 99.5 | 3.1e-32 | 10 | 102 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kk+rl++eqv++LE++F+ ++kLep+ K el++ Lgl +rqvavWFqn+RAR kt+ lE ++ L+++++a +++++Le++v+ L++elk+
Thhalv10014905m 10 NKKKRLTQEQVRQLEKCFTLNKKLEPDLKLELSNMLGLPQRQVAVWFQNKRARSKTQSLELQHCNLQSKLEAALSDKAKLEHQVQYLQDELKR 102
59****************************************************************************************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009646 | Biological Process | response to absence of light |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 157 aa
Download sequence Send
to blast |
MENSLSQSRN KKKRLTQEQV RQLEKCFTLN KKLEPDLKLE LSNMLGLPQR QVAVWFQNKR 60
ARSKTQSLEL QHCNLQSKLE AALSDKAKLE HQVQYLQDEL KRARNQLALF TNQDSPVENS 120
NLGSCEESHD DQVVVFDELY ACLMSNGHGS SPTSWV*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
