PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014889m | ||||||||
Common Name | EUTSA_v10014889mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 19281.3 Da PI: 8.3 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.4 | 5.5e-10 | 15 | 137 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.kg 97 +de++v +yL++kv g+ + + ++i ev ++y+ ePw Lp++++ + +ew++ ++ + + + + +g W a +lsk +g Thhalv10014889m 15 SDEDIVECYLRPKVMGEATAMPRFIVEVgeELYTREPWLLPQQTDPilNPREWFYLGPKWVR------PFQgVYFDGSWDAIEGFFVILSKeTG 102 79****************9998999999778**********644434466799888776554......33336779*****9999999988788 PP NAM 98 elvglkktLvfy..kgrapkge..ktdWvmheyrl 128 e++g+ + +y ++++ kg ++W+m ey l Thhalv10014889m 103 EKIGVTRRYRLYcrNKNDDKGLmlPSEWFMREYLL 137 89999999999954333444434579*******75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.459 | 6 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-7 | 13 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-18 | 15 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MISFASTEEL RCRISDEDIV ECYLRPKVMG EATAMPRFIV EVGEELYTRE PWLLPQQTDP 60 ILNPREWFYL GPKWVRPFQG VYFDGSWDAI EGFFVILSKE TGEKIGVTRR YRLYCRNKND 120 DKGLMLPSEW FMREYLLYHP KFHSHALCKV TYNRPRPRRS M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014889m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400631.1 | 1e-118 | NAC domain-containing protein 5 | ||||
TrEMBL | V4LEH1 | 1e-117 | V4LEH1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400631.1 | 1e-118 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64105.1 | 9e-51 | NAC domain containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014889m |
Entrez Gene | 18017321 |