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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014818m | ||||||||
Common Name | EUTSA_v10014524mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20256.5 Da PI: 5.7292 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Thhalv10014818m 2 SPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 43 89****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.33 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-12 | 1 | 43 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.33E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKAQEK KRPMSPTSSS 60 SNCCSSSMTT ATTDQDTGGS NGNMNQECED GYYSMDDIWR EIDQSGANII KPVKDIYYSE 120 QSCYLNFTPP LTSPTWESSL ESIWNMDAAD ESKMSSFAID QFPLSFQHGR SSWSSLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014818m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229048 | 0.0 | AK229048.1 Arabidopsis thaliana mRNA for MYB27 protein - like, complete cds, clone: RAFL16-34-F17. | |||
GenBank | AY519641 | 0.0 | AY519641.1 Arabidopsis thaliana MYB transcription factor (At5g59780) mRNA, complete cds. | |||
GenBank | DQ075252 | 0.0 | DQ075252.1 Arabidopsis thaliana MYB transcription factor MYB59-1 (At5g59780) mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075253 | 0.0 | DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400917.1 | 1e-130 | transcription factor MYB59 isoform X2 | ||||
Refseq | XP_006400918.1 | 1e-130 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q4JL84 | 1e-100 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | V4LF57 | 1e-130 | V4LF57_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400918.1 | 1e-129 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 3e-97 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014818m |
Entrez Gene | 18017308 |
Publications ? help Back to Top | |||
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