PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10014694m | ||||||||
Common Name | EUTSA_v10014694mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23225.5 Da PI: 8.3518 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 3e-08 | 28 | 79 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP ++K ++ + Av++Ik+ q Thhalv10014694m 28 KLLHRNIERQRRQEMAILFASLRSQLPLqY---IKGKRAMSDHVNGAVNFIKDTQ 79 567999**********************66...9999999***********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-11 | 23 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.46E-7 | 25 | 83 | No hit | No description |
PROSITE profile | PS50888 | 11.407 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-5 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 28 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDPCNIPKKT RHQSHMSHER DETTKEKKLL HRNIERQRRQ EMAILFASLR SQLPLQYIKG 60 KRAMSDHVNG AVNFIKDTQT RIKDLAARRD EMKREIAPIC SDPSSQTGSG SGSNRSDPAS 120 VMVQTCVSGI EVVVNSSVSG LEAWPLSRVL EVLHEQGLEV ISSLTARVNE RLMHTIQVEV 180 NSFVCFDLAW LQQKLIEELA LSTTGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10014694m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401909.2 | 1e-152 | transcription factor bHLH120 | ||||
Swissprot | Q9FLI0 | 1e-115 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | V4LLM0 | 1e-152 | V4LLM0_EUTSA; Uncharacterized protein | ||||
STRING | XP_006401909.1 | 1e-152 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10014694m |
Entrez Gene | 18018206 |
Publications ? help Back to Top | |||
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