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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10014615m |
| Common Name | EUTSA_v10014524mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
MYB_related |
| Protein Properties |
Length: 222aa MW: 25294.3 Da PI: 8.7861 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10014615m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 42 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
Thhalv10014615m 42 RGKMSPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 87
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MGFCSESFRF EGGGRNIRIG LNRTGKSCRL RWVNYLHPGL KRGKMSPQEE RLVLELHAKW 60
GNRWSKIARK LPGRTDNEIK NYWRTHMRKK AQEKKRPMSP TSSSSNCCSS SMTTATTDQD 120
TGGSNGNMNQ ECEDGYYSMD DIWREIDQSG ANIIKPVKDI YYSEQSCYLN FTPPLTSPTW 180
ESSLESIWNM DAADESKMSS FAIDQFPLSF QHGRSSWSSL V*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 6e-18 | 23 | 91 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-17 | 23 | 91 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-17 | 23 | 91 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-17 | 23 | 91 | 60 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 7e-18 | 23 | 91 | 37 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 7e-18 | 23 | 91 | 37 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ075253 | 0.0 | DQ075253.1 Arabidopsis thaliana MYB transcription factor MYB59-2 (At5g59780) mRNA, complete cds, alternatively spliced. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Plant Cell, 2017. 29(9): p. 2086-2105
[PMID:28827376]
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