PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014410m
Common NameEUTSA_v10014410mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 265aa    MW: 29798.1 Da    PI: 6.3716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014410mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.6e-102773346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a + l  +    +W++Ia+ ++ g+t  +++ r+  
  Thhalv10014410m 27 TWTAEENKRFEKALAFLDDKdnpeSWSKIAALIP-GKTVGDVIKRYKE 73
                     7*****************99**************.**********975 PP
2Myb_DNA-binding48.71.8e-15147191347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Thhalv10014410m 147 PWTEEEHRLFLMGLKKYGKGDWRNIAKNFVTTRTPTQVASHAQKY 191
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-51673IPR009057Homeodomain-like
PROSITE profilePS512937.9282377IPR017884SANT domain
SMARTSM007172.8E-72477IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-92682IPR009057Homeodomain-like
PfamPF002493.9E-82773IPR001005SANT/Myb domain
CDDcd001674.10E-82774No hitNo description
Gene3DG3DSA:1.10.10.608.2E-14139195IPR009057Homeodomain-like
PROSITE profilePS5129422.424140196IPR017930Myb domain
SuperFamilySSF466891.59E-17142195IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-18143195IPR006447Myb domain, plants
SMARTSM007175.5E-14144194IPR001005SANT/Myb domain
PfamPF002492.3E-13147191IPR001005SANT/Myb domain
CDDcd001672.67E-12147192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSTNGGFEF FSPENTNWIF QEVRESTWTA EENKRFEKAL AFLDDKDNPE SWSKIAALIP  60
GKTVGDVIKR YKELEDDVSD IEAGLVPIPG YGGDTSSGTT SDYFFGLENP SYGYGYDYVV  120
GGKRSSPATM DYFRPPMPEK ERKKGVPWTE EEHRLFLMGL KKYGKGDWRN IAKNFVTTRT  180
PTQVASHAQK YFIRQLTDCK DKRRSSIHDI TTVNIPDANV STTATATLSP TTTNSFDAFL  240
PPKPHHNFVF ASASSYYNAF PQWS*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014410m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398645.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX80.0V4LJX8_EUTSA; Uncharacterized protein
STRINGXP_006398645.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]