PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10014242m
Common NameEUTSA_v10014242mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 297aa    MW: 32965.6 Da    PI: 7.4996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10014242mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09156203455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++ +L+ l+P +    +k   Ka +L + ++Y++sLq
  Thhalv10014242m 156 SHSLAERVRREKISERMKTLQNLVPGC----NKVTGKALMLDEIIKYVQSLQ 203
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-10150207No hitNo description
SuperFamilySSF474594.32E-17150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17152214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.745152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-7156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-11158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MATFSYFQHY PHSLLDPFLF SPPNSSNKLS GFIDQNPLYS LPNSFTIEDT SLNPFLDSYC  60
NENVESSDVK KYSNNNTTGS SSGDQLSQIP STASAGNNRR RKTRNGFNNK EGVEDRKSKK  120
QRNGCSSDVK KKRTSVEEAP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKTLQNLVP  180
GCNKVTGKAL MLDEIIKYVQ SLQNQVEFLS MKLASISPVV YDFGSDLDGL IVRPEMGPTD  240
VGTSFTNAMP TTTTLLSSLL DDPIIPTQAQ LQEEGEEREK FGDRSGFNSN SFGSFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10014242m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283501e-144AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankAY0575491e-144AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBankAY0876021e-144AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBankAY1130591e-144AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402045.10.0transcription factor bHLH137
SwissprotQ93W881e-135BH137_ARATH; Transcription factor bHLH137
TrEMBLV4LUG10.0V4LUG1_EUTSA; Uncharacterized protein
STRINGXP_006402045.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]