PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 304aa MW: 31923.8 Da PI: 6.793

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10014212m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.9e-12	113	158	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ K +Ka++L + +eY++ Lq Thhalv10014212m 113 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 158 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-17	106	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.20E-13	106	162	No hit	No description
PROSITE profile	PS50888	17.028	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	110	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-9	113	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-13	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MENGNGEGKG EFINQNNTDF FLDSMSMLSS LPPCWDSSLP PPPPPPAPHS LFHALTVDAS 60 FPDQFHHPQE SGGPKIGSQD GLTAQGTVST TSAPVVRQKP RVRARRGQAT DPHSIAERLR 120 RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG GAGAVGPRLN 180 GLTSDVGGRL NALSTGPCNG VKGNGNATGS SNESLRTTEQ RVAKLMEEDM GSAMQYLQGK 240 GLCLMPISLA TAISSTSTHS RGALFNPNSN TAVAAEDANV AVAAAAAAPE ASSTMDDVSA 300 SKA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	122	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10014212m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401139.1	0.0	transcription factor bHLH82
Swissprot	Q9LSQ3	0.0	BH082_ARATH; Transcription factor bHLH82
TrEMBL	V4LJI5	0.0	V4LJI5_EUTSA; Uncharacterized protein
STRING	XP_006401139.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11585	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-134	LJRHL1-like 3

Link Out ? help Back to Top
Phytozome	Thhalv10014212m
Entrez Gene	18016952

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]