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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Thhalv10014142m |
Common Name | EUTSA_v10014142mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family |
SRS |
Protein Properties |
Length: 317aa MW: 33135.3 Da PI: 8.5665 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Thhalv10014142m | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 211.5 | 2e-65 | 106 | 266 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
sgta+CqdCGnqakk+C+++RCRtCCksrgf+C+thvkstWv+aa+rrerq +a + ++ ++++ +k++r + ++q+a+s+t++s++ +
Thhalv10014142m 106 SGTATCQDCGNQAKKECKQRRCRTCCKSRGFECSTHVKSTWVSAARRRERQVLPTANPTAGSSLSTSSGTKKPRIM-GSQQQATSHTSTSNT-P 197
7899**********************************************99888887777777789999999986.677777888887776.6 PP
DUF702 97 kkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++++tss +P +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle
Thhalv10014142m 198 PQSFDTSSsrqdgggsreaWPGQVKAAAVFKCVRVTAVEDGDDEYAYQAVVQIGGHVFKGFLYDQGLEP 266
77888887899*******************************************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MGMVGLRDVY LVAPAYHHHQ NAGVVSGSDH INSNAAALGV GVIPLLTAAP PQQNVEDTDI 60 NFLGDSRRWQ NNNNNNQTQY LQFKSTTHQA TVGSSSNNSG SGSAASGTAT CQDCGNQAKK 120 ECKQRRCRTC CKSRGFECST HVKSTWVSAA RRRERQVLPT ANPTAGSSLS TSSGTKKPRI 180 MGSQQQATSH TSTSNTPPQS FDTSSSRQDG GGSREAWPGQ VKAAAVFKCV RVTAVEDGDD 240 EYAYQAVVQI GGHVFKGFLY DQGLEPKEGF PNMSDLHLGG GGGANNHNGV SASPPVLDPP 300 NVYGGRGGGA GGGFYG*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G12330.2 | 1e-143 | Lateral root primordium (LRP) protein-related |