PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10013729m

Common Name

EUTSA_v10013729mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

G2-like

Protein Properties

Length: 400aa MW: 44729.8 Da PI: 6.7605

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10013729m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.3e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Thhalv10013729m 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-24	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYYHNQHQGK SILSSSRMPI SSERHPFLRG NDTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV 120 EENTPEADES HGESLSIGPQ PSINLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQAILLKAQ ETLGRQNLGP EATKAQLSEL VSKASAEYPD TSFLEPKQVQ TLGHQQMQTT 240 YPQNSSLESC LTSSEGALKP PKMLENGLGL RTYIGDSTSE QKEIMEEPFF QRMELTWGEE 300 EGHNRSYLST IGHNNNAEQR TLSSRRRSPG RLSIGVGLHE QNRGGGSGNS GYTEERFNEN 360 GEDCKLETRT RTALDLNTHD DNYGTTRPKQ FDLNGFSWN*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYYHNQHQGK SILSSSRMPI SSERHPFLRG NDTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENTPEADES HGESLSIGPQ PSINLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQAILLKAQ ETLGRQNLGP EATKAQLSEL VSKASAEYPD TSFLEPKQVQ TLGHQQMQTT  240
YPQNSSLESC LTSSEGALKP PKMLENGLGL RTYIGDSTSE QKEIMEEPFF QRMELTWGEE  300
EGHNRSYLST IGHNNNAEQR TLSSRRRSPG RLSIGVGLHE QNRGGGSGNS GYTEERFNEN  360
GEDCKLETRT RTALDLNTHD DNYGTTRPKQ FDLNGFSWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10013729m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353077	0.0	AK353077.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-K05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400372.1	0.0	myb-related protein 1 isoform X1
Refseq	XP_024012525.1	0.0	myb-related protein 1 isoform X1
Refseq	XP_024012526.1	0.0	myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	V4KV26	0.0	V4KV26_EUTSA; Uncharacterized protein
STRING	XP_006400372.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Link Out ? help Back to Top
Phytozome	Thhalv10013729m
Entrez Gene	18017558

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]