PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013582m
Common NameEUTSA_v10013582mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 437aa    MW: 47205.3 Da    PI: 7.5482
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013582mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06112133426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C+f+   G C yGd+C++ H+
  Thhalv10013582m 112 KVCNFWVD-GNCTYGDKCRYLHC 133
                      68**9*99.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013055IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.4133056IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6108132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286108135IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5112129IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4112133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.2E-15130242IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.8E-4139178IPR001680WD40 repeat
SuperFamilySSF509784.68E-47142429IPR017986WD40-repeat-containing domain
PfamPF004000.005142178IPR001680WD40 repeat
PROSITE profilePS5029420.54146348IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.349146187IPR001680WD40 repeat
PRINTSPR003209.9E-7165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003203.3218255IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.4E-31243429IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.014262299IPR001680WD40 repeat
PfamPF004000.097267299IPR001680WD40 repeat
PROSITE profilePS5008211.712269308IPR001680WD40 repeat
PRINTSPR003209.9E-7286300IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4302339IPR001680WD40 repeat
PfamPF004000.0046304338IPR001680WD40 repeat
PRINTSPR003209.9E-7326340IPR020472G-protein beta WD-40 repeat
SMARTSM003207.7343386IPR001680WD40 repeat
SMARTSM003202.7389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MDFDLNGGNK RVFNRLGGGG GSTRPAPPTD SRQKVCFHWR AGRCNRNPCP YLHRELPGPV  60
PSQGPGGYTN KRVAEESGFA GPSHRRGPGF NGSSSNSWGR FGGNRTVTKT EKVCNFWVDG  120
NCTYGDKCRY LHCWSKGDGF SLLTQLDGHE KLVSGIALPS GSDKLYTGSK DETMRVWDCA  180
SGQCTSVLNL GGEVGCVISE GPWLLVGMPN LVKAWNIETN VDQSLTGPVG QVYSLVVGTD  240
LLFAGTQDGS ILAWRYNAAT NCFEPAASLN GHTLAVVTLY VGANRLYSGS MDKTIKVWSL  300
DNLQCIQTLT DHTSVVMSLI CWDQFLLSCS LDNTVKIWAA TEGGNLEVTY THKEEHGVLA  360
LCGVHDAEAK PVLLCSCNDN SLRLYDLPSF TERGKIFAKQ EIRSVQIGPG GIFFTGDGTG  420
QVKVWKWSTA PTVPTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-211194355320Tako8
6g6n_A4e-211194355320Tako8
6g6n_B4e-211194355320Tako8
6g6n_C4e-211194355320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013582m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520640.0AJ252064.1 Arabidopsis thaliana partial mRNA for zfwd2 protein (zfwd2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401881.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLV4LHV70.0V4LHV7_EUTSA; Uncharacterized protein
STRINGXP_006401881.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein