PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10013344m | ||||||||
Common Name | EUTSA_v10013344mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 498aa MW: 57289.7 Da PI: 5.0829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177 | 5e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v Thhalv10013344m 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRV 98 79****************************.99***************6345667999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+y+grap+g +t Wvmheyrl Thhalv10013344m 99 SW-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 *9.8899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.205 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0090602 | Biological Process | sieve element enucleation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIIV EAKPRDQLQQ HRQPYVHTSS 180 NISGNSSFDV CSDLEISSNT HQVQPYNNAT DTQPRFGNAN AMGDHDDWSQ YLSQDIPTSF 240 SNYGSSYGPY LTQPKVNIEI ECDMLQHQMS LPPLRVENSP VQTSDFSNGM NQNSGQCGFN 300 DFTFATSNST QHYNSNVDDH LINIGNLDEQ FLNAGDSTWM RMSNENLKQS FIEEEEILPS 360 FEDNDQELEF YGGSRTNTIN NIEIDDFFSF ENRVEDNDNS NTTLNSSGFG MIEEEIRVNH 420 KMLICTRQTT EVLYYQVVPS QILKIHINPA HGIEESTMLT EEGKDSWFQK AENVAKMKLK 480 QISLVAKHYY KCLTIIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-54 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-54 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-54 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10013344m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005238 | 1e-101 | AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11. | |||
GenBank | CP002688 | 1e-101 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400258.1 | 0.0 | NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 0.0 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | V4N7S3 | 0.0 | V4N7S3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400258.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4411 | 18 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 0.0 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10013344m |
Entrez Gene | 18018694 |
Publications ? help Back to Top | |||
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