PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10013211m
Common NameEUTSA_v10013211mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 535aa    MW: 59605.4 Da    PI: 7.4518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10013211mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-1775121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ede l +av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  Thhalv10013211m  75 KGGWTPGEDETLRQAVEKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 121
                      688*****************************.************986 PP
2Myb_DNA-binding61.12.3e-19127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++vk++G+  W+ Iar ++ gR +kqc++rw+++l
  Thhalv10013211m 127 KGPWTQEEDDKIAELVKKYGPAKWSVIARSLP-GRIGKQCRERWHNHL 173
                      79******************************.*************97 PP
3Myb_DNA-binding56.75.3e-18179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT+eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Thhalv10013211m 179 KDAWTPEEETALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.82170121IPR017930Myb domain
SMARTSM007172.3E-1574123IPR001005SANT/Myb domain
PfamPF002491.4E-1575121IPR001005SANT/Myb domain
SuperFamilySSF466897.18E-1676131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-2277133IPR009057Homeodomain-like
CDDcd001675.08E-1478121No hitNo description
PROSITE profilePS5129430.545122177IPR017930Myb domain
SuperFamilySSF466897.11E-32124220IPR009057Homeodomain-like
SMARTSM007171.8E-17126175IPR001005SANT/Myb domain
PfamPF002495.6E-18127173IPR001005SANT/Myb domain
CDDcd001671.74E-15129173No hitNo description
Gene3DG3DSA:1.10.10.608.9E-27134180IPR009057Homeodomain-like
SMARTSM007171.1E-16178226IPR001005SANT/Myb domain
PROSITE profilePS5129423.3178228IPR017930Myb domain
PfamPF002493.3E-16179222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-24181228IPR009057Homeodomain-like
CDDcd001673.18E-13181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSSSSIPADC SPDEEERREL RVEIQCMENK QPTPASCSSA SEGSGNFFLK SPEITTPATA  60
SPTHRRTSGP MRRAKGGWTP GEDETLRQAV EKYKGKRWKK IAEFFPDRTE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIAE LVKKYGPAKW SVIARSLPGR IGKQCRERWH NHLNPGIRKD  180
AWTPEEETAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP  240
ATKFGVPNDF ADGNRDSKQF SSAIKPLMDP DSVSETSSDE NEDGRDHVNY FSSALLEEVA  300
SSRRISVNGY TCSPVSDEYK PQLPNPGPIS ERVGINSKAD VERSIQRKQE NGFGTPKHGN  360
LYYKSPLDFY LPSEADLQRI YGYDCGCSPG AASPVTLMTP PCNKDSGLSA TRSPESFLRE  420
AARTFPNTPS IFRKRRKVVV LAKKTDDDDD DVVNGVTKED DQKEKSKDSS EISPVRREGL  480
LLETDDGCGD DEKLGSNGNT FNVSPPYRLS SNRTAVIKSR QLEFASAEEK QPQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10013211m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398696.10.0transcription factor MYB3R-5
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLV4L9320.0V4L932_EUTSA; Uncharacterized protein
STRINGXP_006398696.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]