 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10013181m |
| Common Name | EUTSA_v10013181mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
bHLH |
| Protein Properties |
Length: 546aa MW: 60441.9 Da PI: 7.2954 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10013181m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 55.5 | 1e-17 | 282 | 331 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq
Thhalv10013181m 282 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 331
889*************************9....9*******************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway |
| GO:1902448 | Biological Process | positive regulation of shade avoidance |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MELPQPRPFK TEGRKPTHDF LSLCSHSTVQ PDPKPTPSSQ GSYLKTHDFL QPLECVGAKE 60
EASRINTTTT ASEKPPPPAP LQHVLPGGIG TYTISPIPYF HHHHHHQRIP KPELSPPMMF 120
TAGAQGSGGN ERNVVDENSN SNCSSYAAAA SGFTLWDESR SGKKGQTRKE NNVGERANIR 180
ADVATTMGQW PVVERQSQSL TNNHLSGFSS RSSSQGSGLK SQSFMDMIRS AKGSSQDDDL 240
DDEEDFIMKK ESSSTSQSQR VDLRVKADVR GSGNDQKLNT PRSKHSATEQ RRRSKINDRF 300
QMLRQLIPNS DQKRDKASFL LEVIEYIQFL QEKANKYETP YQGWNHEPAK LLNWQRNNQQ 360
LVPEGTVAFA PKLEEEKSNI PVSALATAQG GTIDQSETLN RAMPTTTPFP MSVQSNSLFS 420
PVIAGNPVTQ FHTRVASSET VEPSPSSRSL TQPLKEEGEE EDEEVHEGNI SISSVYSQGL 480
VKTLREALEN SGVDLTKASI SVEIELAKQS SSFKDHEVRE PISRSGNDDV RQTRKPKRLK 540
TNNRS*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353313 | 0.0 | AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07. |
