 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Thhalv10013115m |
| Common Name | EUTSA_v10013115mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
| Family |
WRKY |
| Protein Properties |
Length: 570aa MW: 62731.6 Da PI: 7.4574 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10013115m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 99.7 | 1.8e-31 | 208 | 265 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+ ++ei+Y+g+H+h+k
Thhalv10013115m 208 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGLITEIVYKGTHDHPK 265
8****************************************.***************85 PP
|
| 2 | WRKY | 106.3 | 1.6e-33 | 376 | 434 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
Thhalv10013115m 376 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 434
59********************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 570 aa
Download sequence Send
to blast |
MDPDISNRKE SRVDSSASGH PDSRRDSSDC GGGGGGGARY KLMSPAKLPI TRSTCITVPP 60
GLSPTSFLES PVLLSNIKAE PSPTTGSLFK PHAVHANSSS YTARTIHQNI LDDQKSSEFE 120
FRPPASNMFY AELDKHRGEA PLQFRSQCHS FKHSPSSATE AAASSSEITR QTVPHRTTPS 180
GSERSDPDES IQAPQHESRG SAPSILADDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV 240
KKLFERSHDG LITEIVYKGT HDHPKPQPSR RNSGGLVMPV QEERLDKYSS LNGRDEKGSS 300
LYNLSPPVDQ NGNPDVSPVS ANDDGGDVAR NNDEVDDNDP FSKRRRLDGA MEITSLVKPI 360
REPRVVVQTL SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTATGCPVR KHVERASHDP 420
KAVITTYEGK HNHDVPTARS NNNNNNNHDM TAPRFRTEES TDTISLDLGV GIASGGPDHT 480
SNEHSSHQQQ QQQQHHIRSE FVQQTQTNGS GGFRFVHGPP MGPYYANSLN AGMNHQYNGS 540
RETANEAQTG DISSSYPYPH NIGRIQSGP*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM593136 | 1e-159 | KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds. |
