PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10013110m | ||||||||
Common Name | EUTSA_v10013110mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 573aa MW: 63808.6 Da PI: 4.2512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv +yLk+kv ++++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky++g+++nrat++gyWk+tgkd+e+ Thhalv10013110m 9 LAPGFRFHPTDEELVRYYLKRKVCNRPFKF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREI 101 579**************************9.99**************95347777888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kktLv++kgrap+ge+t+Wvmheyrl Thhalv10013110m 102 RN-GVRVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136 *9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.162 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNRPFKFDA ISVTDIYKSE PWDLPDKSKL 60 KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE IRNGVRVVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLSDEE LKKAGVSQDA FVLCRIFQKS GTGPKNGEQY GAPFLEEEWE 180 EDKMTFVPDQ DAFSEGLAVD DDVYVDIDDI AENPENLVVY DAIPVPPNYC HGETSNNVES 240 ENYSDSGNYI QPGNYAVDSG GYFEQPIENF EEDQKPIIRD GSIQPCSLFP DEQIDCGVQD 300 ENAVKLETSN SNVFVADTCY SDIPIDTNYL PDEPFIDPNN NLPLSDGLYL ETNDLSSGLQ 360 DGFNFEDYLN FFDDEDTQNL TLDVSQLMGS EDALPDQEGL DQNPSPEEVE KEVAEGKEAV 420 EKTENGEGSS SKQEADVTDF ESASKYPFLK KASHMFGAIP APPSFASQFQ SKDAAIRLHS 480 AQSSGSVHVT AGMIRISNMT LAADSGMGWS YDKNGNLNVV LSFGLVQRDD EMGSSGSKTG 540 GTTATRAMLI FMCLWVLLLS VSFKIGTMVS AR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10013110m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353079 | 0.0 | AK353079.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-K06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398899.1 | 0.0 | NAC domain-containing protein 78 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | V4LD69 | 0.0 | V4LD69_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398899.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 0.0 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10013110m |
Entrez Gene | 18019368 |