PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012984m
Common NameEUTSA_v10012984mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 617aa    MW: 67270.4 Da    PI: 5.0821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012984mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.4e-08255275526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C++Gd+C +aHg
  Thhalv10012984m 255 PCPEFRK-GSCSRGDSCEYAHG 275
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-148136IPR020683Ankyrin repeat-containing domain
CDDcd002041.67E-1311155No hitNo description
Gene3DG3DSA:1.25.40.202.0E-1412163IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-952123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.31857133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00595787IPR002110Ankyrin repeat
PROSITE profilePS500889.64492127IPR002110Ankyrin repeat
SMARTSM002480.001992124IPR002110Ankyrin repeat
SMARTSM003562.5E-5250276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4254277IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-6255275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619255277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4283313IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221285309IPR000571Zinc finger, CCCH-type
SMARTSM0035620285308IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MGDDELSHIK FSPLLESSAC NDLSGFKSLV EEEGLESIDR SGLWYGRRIG SKEMGFEERT  60
PLMVAALFGS KEIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSANSLE VVSLLLNGSA  120
DPDSCDAYGN KPVDMIFPCL SPVFSSRKKV LERLLKGSND LNEVEGQEEE EEEVEERSVS  180
VSPPRGSERK EYPVDPTLPD IKNGVYGTDE FRMYAFKIKP CSRAYSHDWT ECPFVHPGEN  240
ARRRDPRKYH YSCVPCPEFR KGSCSRGDSC EYAHGIFECW LHPAQYRTRL CKDETNCSRR  300
VCFFAHKPEE LRPLYPSTGS GVPSPRSSFS SCNSSAFDMG PISPLPPLSP NGVSTTPPLS  360
PNGVSSPMNG GKTWMNWPSI TPPALQLPGS RLKSALNARE IDFSEEIQSL PSPTIWNNNN  420
TPVSAASSPF SGKGMNRLAG GGMSPVNGLS DMFGADDNTS GLQIRRSVIN PQLHPNSLSS  480
SPVGVNSPFS MDSSTVLASR AAAFAKQRSQ SFIERSNGLN HSPAIPSMTT TCLNDWGSLD  540
GKLDWSVHGD ELQKLRKSTS FRLRAGGIES RLPIEGTGLE EPDVSWVEPL VKEPAETRLA  600
PVWMEQSFME TEQTVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012984m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401060.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV4LRP40.0V4LRP4_EUTSA; Uncharacterized protein
STRINGXP_006401060.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein