PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012905m
Common NameEUTSA_v10012905mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 663aa    MW: 75326.5 Da    PI: 7.5661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012905mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07477518240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE + l+++ +++++g   +W+ I++++g+gR+ +++
  Thhalv10012905m 477 KPWSKEEADMLKKGMTKFPKGtsrRWEVISEYIGTGRSVEEI 518
                      58***********************************99876 PP
2Myb_DNA-binding27.57.5e-09609652445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  ++ lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
  Thhalv10012905m 609 WSAVQELALVQALKTFPKEtnkRWERVAAAVP-GKTMNQCKKKLK 652
                      *****************99*************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.1E-1999203IPR001623DnaJ domain
SuperFamilySSF465653.79E-19100181IPR001623DnaJ domain
SMARTSM002714.6E-14102177IPR001623DnaJ domain
PfamPF002266.1E-17103182IPR001623DnaJ domain
PROSITE profilePS5007617.375103185IPR001623DnaJ domain
CDDcd062573.80E-13103174IPR001623DnaJ domain
PRINTSPR006254.4E-7108126IPR001623DnaJ domain
PRINTSPR006254.4E-7126141IPR001623DnaJ domain
PRINTSPR006254.4E-7157177IPR001623DnaJ domain
PROSITE patternPS006360162181IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.607.2E-5471518IPR009057Homeodomain-like
PROSITE profilePS500906.237471526IPR017877Myb-like domain
SMARTSM007175.7E-5475528IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-7477520IPR009057Homeodomain-like
CDDcd001670.00164478518No hitNo description
SMARTSM007171.9E-8605657IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-8606654IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-5609653IPR009057Homeodomain-like
PfamPF002494.7E-7609653IPR001005SANT/Myb domain
CDDcd001679.84E-6609650No hitNo description
PROSITE profilePS500907.062609655IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MQSWGINSAI KLLTYSDELS DGKPLYASSN CLPVKDLNRE PAGHAFHSAA LKLHGCAKEA  60
TDNKDDTSDK KGSDDKDKEY IPSFDSYNNN NKGKKKSGKQ QHDHYALLGL GNLRYLATED  120
QIRKSYREAA LKHHPDKLAC LLLAEETEEA KQAKKDAIES HFKLIQEAYE VLMDPTKRRI  180
FDSTDEFDDE VPTDCAPQDF FKVFGPAFKR NARWSVNPRV PDLGDENTPL RDVDSYYNFW  240
YAFKSWREFP EEEEHDLEQA DSREEKRWME RENARKTQKA RKEEYARIRT LVDNAYKKDP  300
RILKRKEDEK AKKQQKKDAK VMAKKKLEEE AAAAIEEEKR RKEEEAKLAA EAAQQQKRAK  360
EKEKKLLRKE RSRLRTLSAP VLSQRLLGIS IEHVEDLCMS LNTEQLRNLC DKMENKEGLN  420
LAKVLKNGNS SNDDEIESKD DETESKEEVA QVAAKQNGHV EANGFSMVDS DTQKKDKPWS  480
KEEADMLKKG MTKFPKGTSR RWEVISEYIG TGRSVEEILK ATKTVLLQKP DSAKALDSFL  540
EKRKPAASIA SPLSTREELG EPIIPTTPLE DNNSTKTETK EQSSGNSQEN NNNDNSEPIA  600
AAGSDPDGWS AVQELALVQA LKTFPKETNK RWERVAAAVP GKTMNQCKKK LKDIIRSKKP  660
TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1419930220123Zuotin
5dje_B2e-1419930220123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323341KKKLEEEAAAAIEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012905m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0020300.0AP002030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399072.10.0dnaJ homolog subfamily C member 2
TrEMBLV4KRI40.0V4KRI4_EUTSA; Uncharacterized protein
STRINGXP_006399072.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain