PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012834m
Common NameEUTSA_v10012834mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 699aa    MW: 76285.1 Da    PI: 5.931
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012834mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06440460525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      lC++f   G C++Gd+C F+H
  Thhalv10012834m 440 LCNNFITKGSCHRGDNCLFSH 460
                      8******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.934381408IPR000571Zinc finger, CCCH-type
SMARTSM003560.17383407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6383406IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.436410437IPR000571Zinc finger, CCCH-type
SMARTSM003560.0039410436IPR000571Zinc finger, CCCH-type
SMARTSM003561.6438462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5439464IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.713440463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4440460IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MESSVTPLPY RRSHLSNQTY RSTLHHLCSS FDREPGVSLT TPAILQDLVL RTEIAQASPG  60
ETCEPGKICA DEKPPENLSI LEPRSDGGSG ESRAEKEEKI LMLGDVFDGI DLQDASVGNQ  120
HKDFFDDFEL MINDSEDFVP ESCVNFSETL DVNDYDVDGM AKQALVFVQN VAEKPNNTAT  180
EIQVDSVEGD DKKVSEIIGS KAEEVPKLAE SNEVLSSGVV DINNETLARE MESEKKPVDC  240
SQVVAASISQ MVEDGDVEEG EISGDDNDNM LIGDDLPVER HEDSHVSQEI VDKNGEGTSK  300
SSCSGPSFGV EVLNVENGVK EKDQTSKNQE KMASGTRIKK KSAPSKEAKA RKKAKFRKKR  360
AQERIALGVK KLQLKPVAPK PIPIKYCRHY LKGRCHEGEK CKFSHDTTPE TKSLPCCYFA  420
TQSCMKGDDC PYDHDLSKYL CNNFITKGSC HRGDNCLFSH KGTPQAASDT PSANVTTSST  480
NITAASFSPQ KSNKQTVREA IAKLPTIQAR VSIPDMFLKP SSQANQRNSS DASPPQIPPL  540
RKPSVAPKGM SFLSLEKTSQ EDTVKPPSLG SKQNTQNSDN QSLKQSQQRS SVPMVPPKGI  600
SLTFASEKHK ALNQEPPQES SSSRNLKTTP NSHIQSSLNS TMKLAAEFES AKVERRTNDS  660
AEAVNKGDVA VNTSVTRNSG NIPSKILEFL SSFRHGKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338359KKKSAPSKEAKARKKAKFRKKR
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012834m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240351e-121AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026881e-121CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401265.10.0zinc finger CCCH domain-containing protein 65
SwissprotQ9LTS70.0C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLV4LS750.0V4LS75_EUTSA; Uncharacterized protein
STRINGXP_006401265.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516