PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012818m
Common NameEUTSA_v10012818mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 708aa    MW: 77845.5 Da    PI: 7.0634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012818mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06302322526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f + G Ck Gd C +aHg
  Thhalv10012818m 302 PCPDFKK-GSCKQGDMCEYAHG 322
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.97E-1639167IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.8E-1740184IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1383113IPR002110Ankyrin repeat
PROSITE profilePS5029715.83183176IPR020683Ankyrin repeat-containing domain
PfamPF127969.8E-1083152IPR020683Ankyrin repeat-containing domain
CDDcd002045.10E-1485161No hitNo description
PROSITE profilePS5008811.167118153IPR002110Ankyrin repeat
SMARTSM002483.4E-5118150IPR002110Ankyrin repeat
SMARTSM003561.2E-4297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035684332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MCGLSKKLDT DNNTLSSLSD QECDSVAKPM NDAEWEHSFS ALLEFAADNN VEGFKRQLSV  60
VPCINQEGLW YRRQRFVRKM VLEQRTPLMV ASIYGSLDVV KLILSFPEAE LNLSCGPDKS  120
TALHCAASGA SVNSLDVVKQ LLSAGADPNI PDAHGNRPVD VLVVSPHAPG LRTILEEILK  180
KDEIISEDLH ASSSSLGSSF RSLSSSPDNG SSLLSLDSVS SPTKVNGMDG TFASEKKEYP  240
IDPSLPDIKS GIYSTDEFRM FAFKIRPCSR AYSHDWTECP FAHPGENARR RDPRKFHYTC  300
VPCPDFKKGS CKQGDMCEYA HGVFECWLHP AQYRTRLCKD GMSCNRRVCF FAHANEELRP  360
LYASTGSGLP SPRASSAVST STMDMASVLN MLPGSPSAAQ HSFTPPISPS GNGVMPHSSM  420
GWPQQNIPAL HLPGSNIQLS RLRSSLNARD IPSEQLSMLQ EFEMQRQLVG DMSSPRFMNH  480
SARPKTLTPS NLEEIFSSEV SSPRFSDQLA VSSVLSPSHK SALLNQLQNN KQSMLSPIKT  540
NLMSSPKNVE QHSLLQQGSS PRAMEPISPM NSRMKQQLHS RSLSSRDFGS SMPRDLMPTD  600
SGSPLSPWSS WDQNHGNKVD WSVQSDELGR LRKSHSLANN NSNRDADVSW VQQLVKDSAS  660
PRNNSNRVMN MNGARPLVQG GSSVNPHSDG REGDILDAWL EQLQLDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012818m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525220.0AK352522.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399772.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain