PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10012776m
Common NameEUTSA_v10012776mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 742aa    MW: 83148.8 Da    PI: 8.0492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10012776mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-192679356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++++++q+++Le++F+++++p++++r++L+++l+L+ +q+k+WFqN+R++ k
  Thhalv10012776m 26 IYQRHSNHQIQRLEAYFKECPHPDESQRRKLSEELKLKPKQIKFWFQNKRTQAK 79
                     56789**********************************************988 PP
2START129.24.8e-412584775206
                      HHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
            START   5 eaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                       a +e++k+++ eep+Wvkss       ++en+++  +k+ + k+   ++e +++++vv+ ++ +lve++ld+  +W + ++    +a+t+ v+
  Thhalv10012776m 258 NAVTEVIKLIQIEEPMWVKSSidgrlviDQENYEKLFTKINRFKNpsARIESSKEVVVVPIDARNLVEIFLDTE-KWARLFPtivnEAKTIHVL 350
                      67899***********************************88777999**************************.99999999999*******9 PP

                      CTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
            START  86 ssg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                      +s      ++  lm+ +   lsplvp R+f+++R+++q++++ wv++dvS  + ++   +     + ++pSg+li+ +++g+skvtw+ehv+++
  Thhalv10012776m 351 ESMdprkqNFSKLMYEQVHILSPLVPpREFMILRCCQQMQEDLWVVADVSCHHVNFDF-EFTTPTCSKRPSGCLIQALPDGRSKVTWMEHVEVN 443
                      998899*999999999999999**********************************99.677777899************************** PP

                      SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +++  h l+r l+  g   ga++w+ tl+r ce+
  Thhalv10012776m 444 DKVRtHRLYRDLLCGGFGYGARRWTVTLERMCER 477
                      ***99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-18875IPR009057Homeodomain-like
SuperFamilySSF466892.92E-17881IPR009057Homeodomain-like
PROSITE profilePS5007116.8112181IPR001356Homeobox domain
SMARTSM003892.4E-172385IPR001356Homeobox domain
CDDcd000863.94E-172482No hitNo description
PfamPF000461.6E-162679IPR001356Homeobox domain
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084841.192245480IPR002913START domain
SuperFamilySSF559615.63E-27247478No hitNo description
CDDcd088754.07E-93251476No hitNo description
SMARTSM002348.7E-25254477IPR002913START domain
PfamPF018521.3E-34258477IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-8307442IPR023393START-like domain
SuperFamilySSF559612.33E-7500714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDSSRDSSSS DERETSMNTN NREKKIYQRH SNHQIQRLEA YFKECPHPDE SQRRKLSEEL  60
KLKPKQIKFW FQNKRTQAKA QSEKADNASL RAENMKIRCE NEAIQEALKT VTCPPCGGPR  120
PGKEERELYL QKLRAQNAYL KAQRERLSSY VNKSGVHPTA SVDSVAYPHG PSLYASTSSD  180
NPHVSYGPSS NYLPEPLSLA RGPCPREHSN IAQPPQPPQP PQPPQPPQPP QPPQPRRPQH  240
FQPLSQMENI MMSETTANAV TEVIKLIQIE EPMWVKSSID GRLVIDQENY EKLFTKINRF  300
KNPSARIESS KEVVVVPIDA RNLVEIFLDT EKWARLFPTI VNEAKTIHVL ESMDPRKQNF  360
SKLMYEQVHI LSPLVPPREF MILRCCQQMQ EDLWVVADVS CHHVNFDFEF TTPTCSKRPS  420
GCLIQALPDG RSKVTWMEHV EVNDKVRTHR LYRDLLCGGF GYGARRWTVT LERMCERLSL  480
SSIPAFPTTD YGGVVKTIEG RRSVMRLGEK MSKNFAWILK MSGKFDFSQL SETNSSGVRV  540
SVRVNNEAGQ PPGLIVCAGS SLCLPLSPVQ VYNFLKNLDV RHQWDVLCQG KPVAEVARFV  600
TGLDNKCSVT ILQPTTATEN GELMILQDSF IDALGGMVVY APMDLNTTYA AVSGQVDPSG  660
IAILPSGFII SRDGRPSSTP AAELDGGRDY CKTLLTVAFQ ILVCGPNLSA DLNMEESTAT  720
VNTLISSTVQ RIKAMLNCDG Q*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10012776m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026842e-46CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF21H22e-46AC007894.2 Arabidopsis thaliana chromosome 1 BAC F21H2 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400265.10.0homeobox-leucine zipper protein HDG10
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLV4LPF20.0V4LPF2_EUTSA; Uncharacterized protein
STRINGXP_006400265.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]