PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

FAR1

Protein Properties

Length: 788aa MW: 90511.9 Da PI: 7.7914

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10012731m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.7e-21	56	130	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Thhalv10012731m 56 EFYNAYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 130 6*************************************876..............589*************************98 PP
2	FAR1	67.6	3.2e-21	227	303	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +++it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnHel p Thhalv10012731m 227 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 303 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-16	56	130	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-16	227	303	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-25	399	491	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	673	709	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-7	681	706	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-8	684	711	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence Send to blast
MESADTELNS FNNMVAKAYP IRILNHNNGI NEDEQGGSRV EPYVGLEFDT AEEAREFYNA 60 YATRTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD 120 QIQKEHNHEL GGEAHVEETT TPRPSRAPAP TKLAVTVNPH RPKMKVVDES DREKRSSTGS 180 FKRLKGGGGG GEGEVSNGHH ATQQTKAVSG SEPYAGLEFG SANEACQFYQ AYAEVVGFRV 240 RIGQLFRSKV DNSITSRRFV CSREGFQHPS RMGCGAYMRI KRQDSGGWIV DRLNKDHNHE 300 LEPGKKNEEG LKKIPDDVTG GLDSVDLIEL KDFGNKKIRE NRVGKEWYPL LLDYFQSKQT 360 EDMGFFYAVE LDVNNGSCMS VFWADSRARF ACSQFGDSIV FDTSYRKGNY SVPFATFVGF 420 NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS VVADQDLPIQ QALSQVFPGA 480 HHRFSAWQIR EKERENLRLF PSEFKYEYEK CIYQTQTIVE FDSVWSTLIN KYGLRDDIWL 540 REIYEHRENW VPAYLRASFF AGIPINGTVE TFFGASLDAL TPLREFISRY EQGLEQRREE 600 ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR 660 FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI REIPSGYILH 720 RWTKNAEFGF VRDMESGVSS QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG 780 KKLCWQR*

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence Send to blast

MESADTELNS FNNMVAKAYP IRILNHNNGI NEDEQGGSRV EPYVGLEFDT AEEAREFYNA  60
YATRTGFKVR TGQLYRSRTD GTVSSRRFVC SKEGFQLNSR TGCTAFIRVQ RRDTGKWVLD  120
QIQKEHNHEL GGEAHVEETT TPRPSRAPAP TKLAVTVNPH RPKMKVVDES DREKRSSTGS  180
FKRLKGGGGG GEGEVSNGHH ATQQTKAVSG SEPYAGLEFG SANEACQFYQ AYAEVVGFRV  240
RIGQLFRSKV DNSITSRRFV CSREGFQHPS RMGCGAYMRI KRQDSGGWIV DRLNKDHNHE  300
LEPGKKNEEG LKKIPDDVTG GLDSVDLIEL KDFGNKKIRE NRVGKEWYPL LLDYFQSKQT  360
EDMGFFYAVE LDVNNGSCMS VFWADSRARF ACSQFGDSIV FDTSYRKGNY SVPFATFVGF  420
NHHRQPVLLG CAMVADESKE AFLWLFQTWL RAMSGRRPRS VVADQDLPIQ QALSQVFPGA  480
HHRFSAWQIR EKERENLRLF PSEFKYEYEK CIYQTQTIVE FDSVWSTLIN KYGLRDDIWL  540
REIYEHRENW VPAYLRASFF AGIPINGTVE TFFGASLDAL TPLREFISRY EQGLEQRREE  600
ERKEDFNSYN LQPFLQTKEP VEEQCRRLYT LTVFRIFQNE LVQSYNYLCL KTYEEGAISR  660
FLVRKCGNES EKHAVTFSAS NLNSSCSCQM FEHEGLLCRH ILKVFNLLDI REIPSGYILH  720
RWTKNAEFGF VRDMESGVSS QDLKALMVWS LREAASKYIE FGTSSLEKYK LAYEIMREGG  780
KKLCWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10012731m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006400450.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	V4LPW9	0.0	V4LPW9_EUTSA; Uncharacterized protein
STRING	XP_006400450.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Thhalv10012731m
Entrez Gene	18018915

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]