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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10012199m |
| Common Name | EUTSA_v10012199mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
WRKY |
| Protein Properties |
Length: 466aa MW: 51440.4 Da PI: 4.2252 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10012199m | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 99.1 | 2.7e-31 | 299 | 356 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDg++WrKYGqK+vkg+++prsYY+Ct+++C+vkk+ver a++ k+v++tY g+H+h
Thhalv10012199m 299 DDGFRWRKYGQKVVKGNPNPRSYYKCTYNECQVKKHVERGADNAKLVVTTYDGKHEHA 356
8********************************************************6 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009960 | Biological Process | endosperm development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MIDHDGNFME TISFWAPPSS PSPRTILEML NQTDNGINPI SEIFPQTNLS TYHHHQSEQR 60
SGLGERVAAR IGFNLPPLDA ENISPISAFF RNSTTVPSPV VEISPGFSPS ALLLSPDMFS 120
NSSQIIPSSP MANGETVESC GDNDETTMIF NNDLPHQPLH VDLPPEEGSD GIPTEESVNI 180
PSHESLADPI GAPLNASFEF EIVDQTDIIN RGGDPPLIIN INSESEDEDE DENEGEDEEY 240
NEDEDVDEEE DDDIVAELEV EPSSPKRRKF EVSNMIGATR TSKNERVIIQ MECEEDLPDD 300
GFRWRKYGQK VVKGNPNPRS YYKCTYNECQ VKKHVERGAD NAKLVVTTYD GKHEHAAPAA 360
RISHSGPRSR SGSSSVTQDS TNRTARLGRP PSSSQAMMRP LSSSSAPQID MTQFYMSGLS 420
RLPTLPVNQN TGSTYRNDEP NVIPDGSEVY KGIMHRLSLE FGLQF*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:16293693}. |
| Publications
? help Back to Top |
- Li J,Nie X,Tan JL,Berger F
Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84
[PMID:24003120] - Fatihi A,Zbierzak AM,Dörmann P
Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds.
Plant Physiol., 2013. 163(2): p. 973-85
[PMID:24014578] - Liu P, et al.
Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization.
Mol Plant, 2014. 7(8): p. 1316-1328
[PMID:24719465] - Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M
SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
New Phytol., 2016. 209(2): p. 636-49
[PMID:26389843] - Meng LS,Wang YB,Loake GJ,Jiang JH
Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
Front Plant Sci, 2016. 7: p. 1645
[PMID:27857719] - Meng LS,Wang YB,Loake GJ,Jiang JH
Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade.
Front Plant Sci, 2017. 8: p. 1073
[PMID:28616014]
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