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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10012185m |
| Common Name | EUTSA_v10012185mg |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
bHLH |
| Protein Properties |
Length: 313aa MW: 34839.4 Da PI: 7.086 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10012185m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35.1 | 2.3e-11 | 79 | 122 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
Er RR+++++ f++L llP++ +K +K++i+ +Av IksL+
Thhalv10012185m 79 TERERRKKMRDMFSKLHALLPQL----PPKADKSTIVDEAVSSIKSLE 122
6*********************6....39*****************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009793 | Biological Process | embryo development ending in seed dormancy |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MTNAQELGQE GFVWGISSSD DSGGGCKKME KQQPSLQLSH PLEISISMDK KIAKGKKRTK 60
RNDKNHVEES PDHEIHIWTE RERRKKMRDM FSKLHALLPQ LPPKADKSTI VDEAVSSIKS 120
LEQTLQNLQM KKFEKLQYSS ASNTTPTTSN FPYDPSSSSS PTTLLTPVSS NHPQILTLGT 180
TAAESYSREA FLADQISSSS KNLPYPCNDP IAAFDIWSSR NVVLNICGNE AFFNLCCPKV 240
KPEVFTNVCY LFDKYNIEVL FANVSSNVFR STYMIQAQVN PSYENQLLGD GIGVGEIFKQ 300
AAQELVLYFS SS*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that controls embryo growth (PubMed:18567831, PubMed:18849529, PubMed:23318634). Regulates endosperm breakdown and embryonic epidermal development. Regulates the expression of SBT2.4/ALE1 (PubMed:18849529, PubMed:23318634). Involved in embryonic cuticle formation upstream of SBT2.4/ALE1 (PubMed:23318634). Does not seem to be a general regulator of endosperm patterning. May control specific signaling pathways that coordinate embryo invasion and breakdown of surrounding endosperm tissues (PubMed:18849529). Required for the production the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Acts upstream of KRS (PubMed:28696222). {ECO:0000269|PubMed:18567831, ECO:0000269|PubMed:18849529, ECO:0000269|PubMed:23318634, ECO:0000269|PubMed:28696222}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Zhang Y, et al.
Reduced function of the RNA-binding protein FPA rescues a T-DNA insertion mutant in the Arabidopsis ZHOUPI gene by promoting transcriptional read-through.
Plant Mol. Biol., 2016. 91(4-5): p. 549-61
[PMID:27164978] - Fourquin C, et al.
Mechanical stress mediated by both endosperm softening and embryo growth underlies endosperm elimination in Arabidopsis seeds.
Development, 2016. 143(18): p. 3300-5
[PMID:27287798] - Du Q,Wang H
Retarded Embryo Development 1 (RED1) regulates embryo development, seed maturation and plant growth in Arabidopsis.
J Genet Genomics, 2016. 43(7): p. 439-49
[PMID:27477025] - Moussu S, et al.
ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface.
Plant Cell, 2017. 29(7): p. 1642-1656
[PMID:28696222]
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