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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Thhalv10012074m |
| Common Name | EUTSA_v10012074mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family |
ARF |
| Protein Properties |
Length: 569aa MW: 63793.4 Da PI: 7.6825 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Thhalv10012074m | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 69.9 | 3.5e-22 | 10 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+lt sd+++++ +++p++ ae++ l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F ++++
Thhalv10012074m 10 FCKTLTASDTSTHRGFSVPRRAAEDCfapllY-----LDHLIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDED 96
99************************765442.....346999*********************************************..5699 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+el+++++r+
Thhalv10012074m 97 GELRLGIRRS 106
999****996 PP
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| 2 | Auxin_resp | 50.9 | 6.7e-18 | 147 | 185 | 44 | 82 |
Auxin_resp 44 RfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
Rf+m+fe+eds+err++G+v+gv dl+p+rWpn kWr+L
Thhalv10012074m 147 RFRMRFEMEDSPERRCAGVVTGVCDLEPYRWPNTKWRCL 185
9*************************************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 569 aa
Download sequence Send
to blast |
SSVKRTPHMF CKTLTASDTS THRGFSVPRR AAEDCFAPLL YLDHLIAKDL HGVEWKFRHI 60
YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRDEDGELR LGIRRSARPR NGLPDSIIEK 120
NSCSNILSLV ANAVSTKSMF HVFYSPRFRM RFEMEDSPER RCAGVVTGVC DLEPYRWPNT 180
KWRCLLVRWD ESFVSDHQER VSPWEIDPSG SLPQLSIQSS PRPKRPWAGL LDTTPPGNPI 240
TERGGFLDFE ESVRPSKVLQ GQENIGSASP LQGFDVMNRR ILDFAMQSHA NPILLSSRVK 300
DRFGEFVDAT SLDPACSGVM NLDRFPRVLQ GQEICSLRSF PQIAGFSPAA TSGKPNLGYT 360
DPFAYNQANK SKKSSVYPIN FGGETRKFLA QKEGGLPKNV TADFPFKIDM MGKQKGGDFD 420
MNASSECKLF GFSLPVETPA ANPQSSSKRI CTKVHKQESL VGIAIDLSRL NGYNDLLTEL 480
ERLFNMEGLL RDPEKGWRIL YTDSENDMMV VADDPWHDFC NVVLKIHLYT KEEVENGNND 540
NKSCLEQVAV LMEASVSQPD SSPTVTRV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
| 4ldw_A | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
| 4ldw_B | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
| 4ldx_A | 1e-66 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
| 4ldx_B | 1e-66 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF013466 | 0.0 | AF013466.1 Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete cds. |
| GenBank | AF344313 | 0.0 | AF344313.1 Arabidopsis thaliana auxin response factor 4 (At5g60450) mRNA, complete cds. |
| GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
| GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
Mol. Gen. Mikrobiol. Virusol., 2013.
[PMID:24003511] - Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
[PMID:26108442] - Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
Plant Physiol. Biochem., 2016. 104: p. 146-54
[PMID:27031426] - Matsumura Y, et al.
A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
Biol Open, 2016. 5(7): p. 942-54
[PMID:27334696] - Guan C, et al.
Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
Curr. Biol., 2017. 27(19): p. 2940-2950.e4
[PMID:28943086] - Liu Z, et al.
ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
Plant Cell Physiol., 2018. 59(1): p. 179-189
[PMID:29145642]
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