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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10012074m | ||||||||
Common Name | EUTSA_v10012074mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARF | ||||||||
Protein Properties | Length: 569aa MW: 63793.4 Da PI: 7.6825 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.9 | 3.5e-22 | 10 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd+++++ +++p++ ae++ l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F ++++ Thhalv10012074m 10 FCKTLTASDTSTHRGFSVPRRAAEDCfapllY-----LDHLIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RDED 96 99************************765442.....346999*********************************************..5699 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ Thhalv10012074m 97 GELRLGIRRS 106 999****996 PP | |||||||
2 | Auxin_resp | 50.9 | 6.7e-18 | 147 | 185 | 44 | 82 |
Auxin_resp 44 RfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 Rf+m+fe+eds+err++G+v+gv dl+p+rWpn kWr+L Thhalv10012074m 147 RFRMRFEMEDSPERRCAGVVTGVCDLEPYRWPNTKWRCL 185 9*************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-33 | 2 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-33 | 5 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.41E-19 | 8 | 105 | No hit | No description |
Pfam | PF02362 | 3.7E-20 | 10 | 106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.788 | 10 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-21 | 10 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.9E-13 | 147 | 185 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 4.91E-9 | 447 | 524 | No hit | No description |
PROSITE profile | PS51745 | 20.062 | 449 | 531 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
SSVKRTPHMF CKTLTASDTS THRGFSVPRR AAEDCFAPLL YLDHLIAKDL HGVEWKFRHI 60 YRGQPRRHLL TTGWSIFVSQ KNLVSGDAVL FLRDEDGELR LGIRRSARPR NGLPDSIIEK 120 NSCSNILSLV ANAVSTKSMF HVFYSPRFRM RFEMEDSPER RCAGVVTGVC DLEPYRWPNT 180 KWRCLLVRWD ESFVSDHQER VSPWEIDPSG SLPQLSIQSS PRPKRPWAGL LDTTPPGNPI 240 TERGGFLDFE ESVRPSKVLQ GQENIGSASP LQGFDVMNRR ILDFAMQSHA NPILLSSRVK 300 DRFGEFVDAT SLDPACSGVM NLDRFPRVLQ GQEICSLRSF PQIAGFSPAA TSGKPNLGYT 360 DPFAYNQANK SKKSSVYPIN FGGETRKFLA QKEGGLPKNV TADFPFKIDM MGKQKGGDFD 420 MNASSECKLF GFSLPVETPA ANPQSSSKRI CTKVHKQESL VGIAIDLSRL NGYNDLLTEL 480 ERLFNMEGLL RDPEKGWRIL YTDSENDMMV VADDPWHDFC NVVLKIHLYT KEEVENGNND 540 NKSCLEQVAV LMEASVSQPD SSPTVTRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
4ldw_A | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
4ldw_B | 8e-67 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
4ldx_A | 1e-66 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
4ldx_B | 1e-66 | 4 | 214 | 118 | 360 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10012074m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF013466 | 0.0 | AF013466.1 Arabidopsis thaliana auxin response factor 4 (ARF4) mRNA, complete cds. | |||
GenBank | AF344313 | 0.0 | AF344313.1 Arabidopsis thaliana auxin response factor 4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024006316.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | V4KI31 | 0.0 | V4KI31_EUTSA; Auxin response factor (Fragment) | ||||
STRING | XP_006393583.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10012074m |
Entrez Gene | 18010856 |