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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011866m | ||||||||
Common Name | EUTSA_v10011866mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB_related | ||||||||
Protein Properties | Length: 127aa MW: 14634.5 Da PI: 5.2743 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.3e-12 | 8 | 58 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WT+eE+e lv +++++G g Wk+I gR ++k++w+++ Thhalv10011866m 8 NKWTKEEEEALVAGIAKYGAGKWKKILVDPEfapqlSGRDNINLKDKWRNL 58 69*************************9999999*99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.653 | 1 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 3 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.45E-16 | 5 | 61 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-7 | 6 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-8 | 8 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.91E-19 | 9 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MEEHRKNNKW TKEEEEALVA GIAKYGAGKW KKILVDPEFA PQLSGRDNIN LKDKWRNLTK 60 TQALNESSPN NSSDMSNESR FDAMVFEAIS TINDENGSYY SRILSFIEVK RIYLSLCFSW 120 FLYDIP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011866m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392696.2 | 2e-73 | telomere repeat-binding factor 4 | ||||
Swissprot | F4I7L1 | 3e-25 | TRB4_ARATH; Telomere repeat-binding factor 4 | ||||
TrEMBL | V4KRM7 | 3e-88 | V4KRM7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006392697.1 | 5e-89 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 1e-27 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011866m |
Entrez Gene | 18011408 |
Publications ? help Back to Top | |||
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