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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10011760m | ||||||||
Common Name | EUTSA_v10011760mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 25956.1 Da PI: 4.413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.8 | 2.6e-15 | 33 | 120 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 k+ + +++ k++++ +p +f+ + g ++ + t+t+e++ g + ++++ ++ ++++++++GW+eF+ka+ L g f+ F+++g+s+f +v + Thhalv10011760m 33 KIIL-HSTIKEKMMKIPARFV-RLG--PKLTDTVTIETPAGFKRSIRI--KRVGDEVWFENGWSEFAKAHSLSKGHFLYFYYKGNSSF--RVVI 118 4443.45566677********.565..45777****************..9**********************************999..8888 PP E- CS B3 97 fr 98 f+ Thhalv10011760m 119 FD 120 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.26E-20 | 28 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 30 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-16 | 30 | 120 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 30 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-16 | 31 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-13 | 33 | 120 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKTSRRSSVR STSAAYQRRL EPEPKPALDR FMKIILHSTI KEKMMKIPAR FVRLGPKLTD 60 TVTIETPAGF KRSIRIKRVG DEVWFENGWS EFAKAHSLSK GHFLYFYYKG NSSFRVVIFD 120 VSALEIDYPL DKVDVIESDD DDDDEVMEVM DLEEEEEEEE EGFSGVESSD DDSCSVIDLE 180 EMLKKKPRVN IKSEQITTDD VEEIDSMDDI EEYEIALTRR KRSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10011760m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393254.1 | 1e-161 | B3 domain-containing protein At1g49475 | ||||
Swissprot | Q9XIB4 | 3e-81 | Y1475_ARATH; B3 domain-containing protein At1g49475 | ||||
TrEMBL | V4JYG5 | 1e-160 | V4JYG5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393254.1 | 1e-160 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 2e-65 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10011760m |
Entrez Gene | 18010811 |
Publications ? help Back to Top | |||
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