PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10011752m

Common Name

EUTSA_v10011752mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 230aa MW: 25775.3 Da PI: 6.0805

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10011752m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	73	119	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRd++N++f eL ++l + + +K +K++i A++ +++ Thhalv10011752m 73 SKACREKQRRDKLNEKFTELSSILEPG---RLPKTDKVAIINDAIRMVNQ 119 5678********************8...89***********99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.15	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.87E-8	72	125	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-11	73	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-8	73	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-12	74	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-8	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGAF SDQNPTFPWP IDQIDGSASV SVEVDGFLCD SDVIKEPGSR 60 KRIKSETCGG SSSKACREKQ RRDKLNEKFT ELSSILEPGR LPKTDKVAII NDAIRMVNQV 120 RDEAQKLKDL NSSLQEKIKE LKDEKNELRD EKQKLKIEKE RIEQQLKAIK TQPQPQPLFL 180 PNPPTMSQGQ APGSKLVPFT TYPGFAMWQF MPPAAVDTSQ DHVLRPPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10011752m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353406	0.0	AK353406.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-I24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006393084.1	1e-168	transcription factor bHLH115
Swissprot	Q9C682	1e-153	BH115_ARATH; Transcription factor bHLH115
TrEMBL	E4MY09	1e-167	E4MY09_EUTHA; mRNA, clone: RTFL01-30-I24
TrEMBL	V4JXZ4	1e-167	V4JXZ4_EUTSA; Uncharacterized protein
STRING	XP_006393084.1	1e-167	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-145	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thhalv10011752m
Entrez Gene	18010879

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]